View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17108_high_1 (Length: 707)

Name: NF17108_high_1
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17108_high_1
NF17108_high_1
[»] chr5 (19 HSPs)
chr5 (14-707)||(13372603-13373290)
chr5 (389-699)||(13378768-13379078)
chr5 (175-355)||(13378513-13378693)
chr5 (452-694)||(13385391-13385633)
chr5 (452-617)||(13412948-13413113)
chr5 (452-694)||(13389212-13389454)
chr5 (14-107)||(13378341-13378434)
chr5 (456-694)||(13419297-13419535)
chr5 (456-580)||(13426188-13426312)
chr5 (452-694)||(13393619-13393861)
chr5 (456-694)||(13446848-13447086)
chr5 (452-682)||(13453797-13454027)
chr5 (30-107)||(13425703-13425780)
chr5 (39-107)||(13453235-13453303)
chr5 (36-107)||(13418835-13418906)
chr5 (30-79)||(13446409-13446458)
chr5 (175-222)||(13419008-13419055)
chr5 (175-222)||(13425898-13425945)
chr5 (30-79)||(13394330-13394379)
[»] chr8 (3 HSPs)
chr8 (420-681)||(28430608-28430869)
chr8 (15-107)||(28431504-28431596)
chr8 (616-693)||(38749265-38749342)
[»] chr4 (2 HSPs)
chr4 (452-679)||(47601115-47601342)
chr4 (17-111)||(47600575-47600669)


Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 14 - 707
Target Start/End: Original strand, 13372603 - 13373290
Alignment:
Q  14 atcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccctgccagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372603 atcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccctgccagc 13372702  T
Q  114 attttgtagaattaacaactttcttaaaatatatatatagggtataatgacattgttttctatatgcttacctccaattaaagaaaatgcaggaagctcc 213  Q
    |||||| |||||||||||||||||||||||| |      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372703 attttgaagaattaacaactttcttaaaataaa------gggtataatgacattgttttctatatgcttacctccaattaaagaaaatgcaggaagctcc 13372796  T
Q  214 aaaggcttttctggagctccaaccataacaagtttaccatgattcttcaataaacccatcaagggcattagtggatggagtgctgaaacagtgtcaataa 313  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372797 aaaggcttctctggagctccaaccataacaagtttaccatgattcttcaataaacccatcaagggcattagtggatggagtgctgaaacagtgtcaataa 13372896  T
Q  314 taccatcaagggtgtccattacagcctataacataatgaacagtgttagaagtttataactgatttcatatatagattagttattaaaagcgagctattg 413  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372897 taccatcaaaggtgcccattacagcctataacataatgaacagtgttagaagtttataactgatttcatatatagattagttattaaaagcgagctattg 13372996  T
Q  414 gtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372997 gtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatca 13373096  T
Q  514 ctgttacattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtcc 613  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13373097 ctgttacattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtcc 13373196  T
Q  614 aaaatatttcaaagggctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaagtcatcaggaatacggatcaagaag 707  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13373197 aaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaag 13373290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 389 - 699
Target Start/End: Original strand, 13378768 - 13379078
Alignment:
Q  389 attagttattaaaagcgagctattggtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttc 488  Q
    |||||| |||||||||||  ||||||||||||||| ||| |||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||    
T  13378768 attagtcattaaaagcgaattattggtacgcaccttcatctggtcttgttcgcgactaaccacgaatgagtcagctcctaagcgttcaatggcttccttc 13378867  T
Q  489 tttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacaccca 588  Q
    ||||||||||||||||| |||| ||| ||||| ||| ||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||| |    
T  13378868 tttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacaccta 13378967  T
Q  589 catgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaagtcatc 688  Q
     ||| |  ||||| |||| || |||||||| |||||  |||||||||||||||||||| |||||||| |||||||| || |||||||||| |||| ||||    
T  13378968 tatgcagtccaggtttgtcaaatccaaaatgtttcattgggctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatc 13379067  T
Q  689 aggaatacgga 699  Q
     ||||||||||    
T  13379068 gggaatacgga 13379078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 13378513 - 13378693
Alignment:
Q  175 atatgcttacctccaattaaagaaaatgcaggaagctccaaaggcttttctggagctccaaccataacaagtttaccatgattcttcaataaacccatca 274  Q
    |||||||||||  |||| ||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| | ||    
T  13378513 atatgcttacccacaatcaaagaaaatactggaaactccaaaggcttctctggagctccaaccataacaagtttaccattattcttcaatagaccaagca 13378612  T
Q  275 agggcattagtggatggagtgctgaaacagtgtcaataataccatcaagggtgtccattacagcctataacataatgaaca 355  Q
    | |||||||| ||||||||||||||||||||||| || || |||||||  ||  |||||||||||||||||||| ||||||    
T  13378613 aaggcattagaggatggagtgctgaaacagtgtcgatgattccatcaaacgttcccattacagcctataacatattgaaca 13378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 452 - 694
Target Start/End: Complemental strand, 13385633 - 13385391
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    |||||| |||||||||||||||||  | |||||||| | |||| ||| ||| || || || || || ||||||||||||||||||||| |||||||||||    
T  13385633 aaatgaatcagctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcaca 13385534  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcac 651  Q
    ||||| ||||| |  |||||||||||||| ||||| ||||| | |||||| ||||  |||||||| ||| | | ||| || ||||| |||||||| ||||    
T  13385533 gccatgtgaccaagcccaccaagaccaacaacaccgacatgaagaccaggtttgtcgagtccaaagtatctaagaggactgtacacagtgatcccagcac 13385434  T
Q  652 aaagaagaggagcagcggcatcaagtggtaagtcatcaggaat 694  Q
    |||| ||||| ||||| || |||||||||||  ||||||||||    
T  13385433 aaaggagaggtgcagcagcttcaagtggtaatccatcaggaat 13385391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 452 - 617
Target Start/End: Original strand, 13412948 - 13413113
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    |||||| ||||||||||||||||| || |||||||| | ||||||||| || || || || || || ||||||||||| ||||||||| |||||||||||    
T  13412948 aaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcaca 13413047  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaa 617  Q
    |||||||| || | ||||||||||||||| ||||| | ||||||||||||||| |  |||||||||    
T  13413048 gccatatggccaagtccaccaagaccaacaacacctatatgtaaaccaggcttatcgagtccaaaa 13413113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 452 - 694
Target Start/End: Complemental strand, 13389454 - 13389212
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    |||||| || |||||||||||||| || ||||| |||| |||||| || || || || |||||||||||| | |||||||| |||||| |||||||||||    
T  13389454 aaatgaatcggctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcaca 13389355  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcac 651  Q
    ||||| ||||| |  |||||||||||||| ||||| | | | | |||||| || |  |||||| ||||| | | ||| || ||||| |||||||| ||||    
T  13389354 gccatgtgaccaagcccaccaagaccaacaacacctatacgaagaccaggtttatcgagtccataatatctaagaggactgtacacagtgatcccagcac 13389255  T
Q  652 aaagaagaggagcagcggcatcaagtggtaagtcatcaggaat 694  Q
    |||| ||||| ||||| || |||||||||||  ||||||||||    
T  13389254 aaaggagaggtgcagcagcttcaagtggtaatccatcaggaat 13389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 13378341 - 13378434
Alignment:
Q  14 atcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccct 107  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  13378341 atcaggttttacgccatgtttggctgcaaaatcaatcatttcttgtgtttccttcatccctccaatcatactcccaccaattgtctttctccct 13378434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 456 - 694
Target Start/End: Original strand, 13419297 - 13419535
Alignment:
Q  456 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 555  Q
    ||||||||||| |||||||| || |||||||| | ||||| ||| || || || || || || ||||||||||| ||||||||  |||||||||||||||    
T  13419297 gagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagcca 13419396  T
Q  556 tatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcacaaag 655  Q
    |||| || | ||||||||||||||| ||||| | ||  | |||||||||||  ||| |||||| |   | ||| |||||||||||||| || || |||||    
T  13419397 tatggccaagtccaccaagaccaacaacacctatattcataccaggcttgtcgagttcaaaatgtcgaagaggactatacactgtgattccagcgcaaag 13419496  T
Q  656 aagaggagcagcggcatcaagtggtaagtcatcaggaat 694  Q
    ||||||| | || |||||||| ||||||  |||||||||    
T  13419497 aagaggaccggcagcatcaagaggtaagctatcaggaat 13419535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 580
Target Start/End: Original strand, 13426188 - 13426312
Alignment:
Q  456 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 555  Q
    |||||||||||||| ||||| || |||||||| | |||| |||| || || || || ||||||||||||||||||||||||||| | |||||||||||||    
T  13426188 gagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagcca 13426287  T
Q  556 tatgacctaatccaccaagaccaac 580  Q
    ||||||| | |||||||||||||||    
T  13426288 tatgaccaagtccaccaagaccaac 13426312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 452 - 694
Target Start/End: Complemental strand, 13393861 - 13393619
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    |||||| |||||||||| || ||| || ||||| |||| |||||| || || || || || |||||||||||||| |||||||||||  |||| ||||||    
T  13393861 aaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgttacattagctccaaaagcttttgcaaacttcaca 13393762  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcac 651  Q
     |||  ||||| | ||||||||||||||| | ||| | ||  | |||||||||||  ||||||||||||   | ||| |||||||| || || || ||||    
T  13393761 cccaagtgaccaagtccaccaagaccaacaatacctatattcataccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcac 13393662  T
Q  652 aaagaagaggagcagcggcatcaagtggtaagtcatcaggaat 694  Q
    |||| ||||||||||| |  |||||||||||| ||||||||||    
T  13393661 aaaggagaggagcagcagattcaagtggtaagccatcaggaat 13393619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 694
Target Start/End: Original strand, 13446848 - 13447086
Alignment:
Q  456 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 555  Q
    ||||| |||||||||||||| || |||||||| |  || ||||| || || || || || || || |||||||||||||||||  |||||||||||||||    
T  13446848 gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagcca 13446947  T
Q  556 tatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcacaaag 655  Q
    ||||||| | ||||||||||||||| || || | ||  | |||||||||||  |||||||||| |   | ||| |||||||||||||  || || |||||    
T  13446948 tatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaatgtcgaagaggactatacactgtgactccagcgcaaag 13447047  T
Q  656 aagaggagcagcggcatcaagtggtaagtcatcaggaat 694  Q
    ||||||| | ||  ||||||| ||||||  |||||||||    
T  13447048 aagaggaccggcaccatcaagaggtaagctatcaggaat 13447086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 682
Target Start/End: Original strand, 13453797 - 13454027
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    ||||||||| |||| ||||||||| |  |||||||| |  || ||||| || || || || || || ||||||||||| ||||||||| | ||||||||     
T  13453797 aaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacg 13453896  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcac 651  Q
    |||||||| || | ||||||||||||||| ||||| | ||  | | |||||||||  |||||||||| |   | ||| ||||| || || ||||| ||||    
T  13453897 gccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaatgtcgaagaggactatatacggttatcccagcac 13453996  T
Q  652 aaagaagaggagcagcggcatcaagtggtaa 682  Q
    |||| ||||||||||| |||||||| |||||    
T  13453997 aaaggagaggagcagctgcatcaagaggtaa 13454027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 13425703 - 13425780
Alignment:
Q  30 tgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccct 107  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||| | | || ||||||||||    
T  13425703 tgttcggccgcaaaatcaatcatttcttgagtctcctttatccctccaatcaaacttccagctactaactttctccct 13425780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 13453235 - 13453303
Alignment:
Q  39 gcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccct 107  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||| ||  | | |||||||||||||    
T  13453235 gcaaaatcaatcatttcttgagtctccttgatccctccaatcaaacttcctgctactatctttctccct 13453303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 13418835 - 13418906
Alignment:
Q  36 gctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccct 107  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||| ||| ||| | | || ||||||||||    
T  13418835 gctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctactaactttctccct 13418906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 13446409 - 13446458
Alignment:
Q  30 tgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaat 79  Q
    ||||| || |||||||||||||||||||| ||||| ||||||||||||||    
T  13446409 tgtttagcagcaaaatcaatcatttcttgagtctcttttatccctccaat 13446458  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 13419008 - 13419055
Alignment:
Q  175 atatgcttacctccaattaaagaaaatgcaggaagctccaaaggcttt 222  Q
    |||||||||||||||| |||||||||| |||||||||| | |||||||    
T  13419008 atatgcttacctccaagtaaagaaaatacaggaagctctagaggcttt 13419055  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 13425898 - 13425945
Alignment:
Q  175 atatgcttacctccaattaaagaaaatgcaggaagctccaaaggcttt 222  Q
    |||||||||||||||| |||||||||| |||||||||| | |||||||    
T  13425898 atatgcttacctccaagtaaagaaaatacaggaagctctagaggcttt 13425945  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 13394379 - 13394330
Alignment:
Q  30 tgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaat 79  Q
    ||||| || |||||||||||||||||||||||||| || || ||||||||    
T  13394379 tgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctccaat 13394330  T

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Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 420 - 681
Target Start/End: Complemental strand, 28430869 - 28430608
Alignment:
Q  420 acctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgtta 519  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||| |   ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  28430869 acctgcatttgatcttgttcactgctaaccacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtta 28430770  T
Q  520 cattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaata 619  Q
    | |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |  || ||   ||| || | ||||||||||||    
T  28430769 ccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaata 28430670  T
Q  620 tttcaaagggctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggta 681  Q
    |||||||||||||||||| |||||||| || || || |||||||| || |||||||| ||||    
T  28430669 tttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggta 28430608  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 28431596 - 28431504
Alignment:
Q  15 tcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccct 107  Q
    ||||||||||| |||||||| || |||||||| |||||||||||||||||||| || ||||| ||||  ||||| || |||||||||||||||    
T  28431596 tcaggtttcacgtcatgtttagcagcaaaatctatcatttcttgtgtctccttaattcctccgatcaggctccctcctattatctttctccct 28431504  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 693
Target Start/End: Original strand, 38749265 - 38749342
Alignment:
Q  616 aatatttcaaagggctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaagtcatcaggaa 693  Q
    |||||||||  ||||||||||| |||||||| ||||| ||||| |||||| | || ||||| |||||||  |||||||    
T  38749265 aatatttcatcgggctatacacggtgatcccggcacacagaagtggagcaccagcgtcaagaggtaagttgtcaggaa 38749342  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 452 - 679
Target Start/End: Original strand, 47601115 - 47601342
Alignment:
Q  452 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 551  Q
    |||||||||||||||||||  |||  | ||||| || | ||||||||| || || || || || || |||||||| |||||||||||  |||| || |||    
T  47601115 aaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaaca 47601214  T
Q  552 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatacactgtgatccccgcac 651  Q
    ||||| ||||| | ||||||||||||||| ||||| | ||| | |||||| || |  ||||||||||||   | ||| |||||||||||||| || ||||    
T  47601215 gccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcac 47601314  T
Q  652 aaagaagaggagcagcggcatcaagtgg 679  Q
    |||||||||||||||  || ||||||||    
T  47601315 aaagaagaggagcagtagcttcaagtgg 47601342  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 47600575 - 47600669
Alignment:
Q  17 aggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcccaccaattatctttctccctgcca 111  Q
    |||||| ||||  ||||| || |||||||||| ||| ||||| |||||||| |||||||||||  |||| ||| | | |||||||||||||||||    
T  47600575 aggttttacattgtgtttagcagcaaaatcaagcatatcttgagtctccttcatccctccaatattacttccagctactatctttctccctgcca 47600669  T

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