View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_10 (Length: 397)
Name: NF17108_high_10
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39087996 - 39087730
Alignment:
| Q |
1 |
aaaaacattccaaacattcaacaccaaataatgattcattcaacaatgaatcaaaactcacaacaacagagcaaagtagatcaatggatacagattctct |
100 |
Q |
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| T |
39087996 |
aaaaacattcgaaacattcaacaccaaataatgattcattcaacaatgaatcaaaactcacaacaacagagcaaagtagatcaatggatacagattctct |
39087897 |
T |
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| Q |
101 |
ccaactccatggaacaactaatgataacttaccatctaaaaggacttattctaagaagacaaaagatattcaaggggttggtggctcatccaaagcaaga |
200 |
Q |
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| T |
39087896 |
ccaactccatggaacaactaatgataacttaccatctaaaaggacttattctaagaagacaaaagatattcaaggggttggtggctcatccaaagcaaga |
39087797 |
T |
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| Q |
201 |
tcaaaagcccaacataaggagcctgattccggtgaagaaacacattttagatccagttcaaaatcta |
267 |
Q |
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| T |
39087796 |
tcaaaagcccaacataaggagcctgattccggtgaaggaacacattctagatccagttcaaaatcta |
39087730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 381
Target Start/End: Complemental strand, 39087690 - 39087565
Alignment:
| Q |
256 |
gttcaaaatctagagaccctgattctaaagaagtacctcattcgaggtccggctccaaatcgaagaatctaaactcgaatgaaggacacccttctagaca |
355 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
39087690 |
gttcaaaatctagagaccctgattctaaagaaggacctcattcgaggtccggctccaaatcgaagaatctaaactcgaacgaaggacacccttccagaca |
39087591 |
T |
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| Q |
356 |
cgatgccaaatctaagagcaagcata |
381 |
Q |
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| T |
39087590 |
cgatgccaaatctaagagcaagcata |
39087565 |
T |
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