View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_12 (Length: 383)
Name: NF17108_high_12
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Original strand, 41770647 - 41771018
Alignment:
| Q |
12 |
cagagaacaaaagaaaatgctgattatgctgctgagaaagccagagaaacgaaggacacaactgcaaataaagccggggaatacacaaactatgctgcag |
111 |
Q |
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| T |
41770647 |
cagaaaacaagagaaaatgctgattatgctgctgagaaagccagagaaacgaaggacacaactgcaaataaagccggggaatacacaaactatgctgcag |
41770746 |
T |
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| Q |
112 |
agaaagcgagggaggcaaaagatactactgcgaataaagcaggggagtatacaaactatgcggcagagaaggcgaaggaagcgaaggatgcaacggtgaa |
211 |
Q |
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| T |
41770747 |
agaaagcgagggaggcaaaagataccactgcgaataaagcaggggagtatacaaactatgctgcagagaaggcgaaggaagcgaaggatgcaacggtgaa |
41770846 |
T |
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| Q |
212 |
caaagctggggagtatacgaactatgctgctgataaggcgaagcaggcaaaggatgcaacggtgcagaaggctggagaagctaaagatgctacagtgaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41770847 |
caaagctggggagtatacgaactatgctgctgataaggcgaagcaggcaaaggatgcaacggtgcagaaggctggagaagctaaagatgctacagtgaac |
41770946 |
T |
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| Q |
312 |
aaagctggagagtataaggattatactgctgagaaggctgtagaagctaaggataccaccgtggggaagctt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41770947 |
aaagctggagagtataaggattatactgctgagaaggctgtagaagctaaggataccaccgtggggaagctt |
41771018 |
T |
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