View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_14 (Length: 352)
Name: NF17108_high_14
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 49904 - 49583
Alignment:
| Q |
18 |
taaaatttctaaaaatgttgtggaaaatatgccctaaacaaatgtctagttctgtacattgaataattgtttatttttctttgtactagtagtaggctct |
117 |
Q |
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| T |
49904 |
taaaatttctaaaaatgttgtggaaaatatgccctaaacaaatgtctagttctgtacattgaataattgtttatttttctttgtactagtagtaggctct |
49805 |
T |
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| Q |
118 |
tgagattttggtgagttttttgttccaggttgtaattgatgacagatataaatatcaatttattctatcttgttatataaaaatagatatggcacgaatc |
217 |
Q |
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| T |
49804 |
tgagattttggtgagttttttgttccaggttgtaattgatgacagatataaatatcaatttattctatcttgttatataaaaatagatatggcacgaatc |
49705 |
T |
|
| Q |
218 |
aatgtttgtggaattgggttctttttcttgacccatttgcagattctttttccttattaaaggaataagagcaaccaacaactagtgcgatgctgatctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49704 |
aatgtttgtggaattgggttctttttcttgacccatttgcagattctttttccttattaaaggaataagagcaaccaacaactagtgcgatgctgatctc |
49605 |
T |
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| Q |
318 |
ccaaagatcatgttcttattct |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
49604 |
ccaaagatcatgttcttattct |
49583 |
T |
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