View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_19 (Length: 313)
Name: NF17108_high_19
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_19 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35934794 - 35934492
Alignment:
| Q |
1 |
cactgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934794 |
cactgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggt |
35934695 |
T |
|
| Q |
101 |
cattatgttcctcaacttgcatccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35934694 |
cattatgttcctcaacttgcatccactattcttcaccaccataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatct |
35934595 |
T |
|
| Q |
201 |
tcaaaagactaataatgcaatataactcactatcacatataactaactttatgattatttgtacttcaaatttttcagatagggaatgcttggattgatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934594 |
tcaaaagactaataatgcaatataactcactatcacatataactaacttcatgattatttgtacttcaaatttttcagatagggaatgcttggattgatg |
35934495 |
T |
|
| Q |
301 |
atg |
303 |
Q |
| |
|
||| |
|
|
| T |
35934494 |
atg |
35934492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35921388 - 35921085
Alignment:
| Q |
1 |
cactgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
35921388 |
cactgctaaagatgcctatgtcttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgccggt |
35921289 |
T |
|
| Q |
101 |
cattatgttcctcaacttgcatccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| || |
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|
| T |
35921288 |
cattatgttcctcaacttgcatccactattctttacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaact |
35921189 |
T |
|
| Q |
201 |
tcaaaagactaataatgcaatataactcactatcacatataactaactttatgattatttgtactt-caaatttttcagatagggaatgcttggattgat |
299 |
Q |
| |
|
|| || ||||||||||| |||||||||| | ||| |||| |||| | || ||||| | ||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
35921188 |
tcgaatgactaataatgaaatataactcgcaatctcataattctaatctcattattatctatacttaaaaaaatttcagatagggaatgcttggattgat |
35921089 |
T |
|
| Q |
300 |
gatg |
303 |
Q |
| |
|
|||| |
|
|
| T |
35921088 |
gatg |
35921085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 35940356 - 35940058
Alignment:
| Q |
2 |
actgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtc |
101 |
Q |
| |
|
||||| || ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
35940356 |
actgccaaggattcctatgtcttccttatcaactggctggagagatttccacagtacaaaacaagagatttttacataagtggagagagttatgctggtc |
35940257 |
T |
|
| Q |
102 |
attatgttcctcaacttgcatccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatctt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||| ||| |
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|
| T |
35940256 |
attatgttcctcaacttgcatccactattctacacaacaataaactctataagaacaccattattaacctcaaaggcatttctgtatgttgatcaaactt |
35940157 |
T |
|
| Q |
202 |
caaaagactaataatgcaatataactcactatcacatataactaactttatgattatttgtacttcaaatttttcagatagggaatgcttggattgatga |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||| |||||| | ||||| ||||| | || |||||| |||||||||||||||||||||| |
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|
| T |
35940156 |
caaaagactaataatgcaatataaatcacaatctcatatatctaact---tcattatctgtacatacaaaatttcagttagggaatgcttggattgatga |
35940060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 35915012 - 35914713
Alignment:
| Q |
5 |
gctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtcatt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
35915012 |
gctaaagatgcctatgttttcctcatcaactggctggagagatttccacagtacaaaacaagagctttttacataactggagagagttatgctggtcact |
35914913 |
T |
|
| Q |
105 |
atgttcctcaacttgcatccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatcttcaa |
204 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||| ||| | |
|
|
| T |
35914912 |
atgttccgcagcttgcatcgactattcttcacaacaataaactctataacaacaccactattaacctcaaaggcatttctgtatgttgttcaaactttga |
35914813 |
T |
|
| Q |
205 |
aagactaataatgcaatataactcactatcacatataactaactttatgattatttgtac-ttcaaatttttcagatagggaatgcttggattgatgatg |
303 |
Q |
| |
|
||||||||||||||||||||||| | | | |||| | |||||||||| ||||| | ||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35914812 |
aagactaataatgcaatataactgtcaacctcataaatctaactttatcattatctttacaataaaaaatttcagatagggaatgcttggattgatgatg |
35914713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 35927959 - 35927678
Alignment:
| Q |
23 |
ttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtcattatgttcctcaacttgcat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927959 |
ttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcat |
35927860 |
T |
|
| Q |
123 |
ccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatcttcaaaagactaataatgcaata |
222 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||| || | ||||||||||||||||| |||||||||| |||| ||||||||||| || ||| ||| |
|
|
| T |
35927859 |
cgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatg |
35927760 |
T |
|
| Q |
223 |
taactcactatcacatataactaactttatgattatttgtac-ttcaaatttttcagatagggaatgcttggattgatgatg |
303 |
Q |
| |
|
|||||||| ||| |||| | |||||||||| ||||| | ||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35927759 |
taactcacaatctcataaatctaactttattattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
35927678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 35910580 - 35910278
Alignment:
| Q |
2 |
actgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtc |
101 |
Q |
| |
|
||||| ||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910580 |
actgccaaagacacctatgtcttcctcgtcaactggctggagagatttccacaatacaaaaccagagatttttacataactggagagagttatgctggtc |
35910481 |
T |
|
| Q |
102 |
attatgttcctcaacttgcatccactattcttcaccacaataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatctt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||| | || | ||| |
|
|
| T |
35910480 |
attatgttcctcaacttgcatccactattctacacaacaataaactctataacaacaccattgttaacctcaaaggcatttctgtatgattttccaactt |
35910381 |
T |
|
| Q |
202 |
caaaagactaataatgcaatataactcactatcacatataactaactttatgattatttgtac-ttcaaatttttcagatagggaatgcttggattgatg |
300 |
Q |
| |
|
|||||||| || ||| ||| |||||||| ||| |||| | ||||||| | ||||| | ||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
35910380 |
caaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatg |
35910281 |
T |
|
| Q |
301 |
atg |
303 |
Q |
| |
|
||| |
|
|
| T |
35910280 |
atg |
35910278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 11084527 - 11084447
Alignment:
| Q |
65 |
agagatttttacataactggagagagttatgctggtcattatgttcctcaacttgcatccactattcttcaccacaataaa |
145 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||| ||||| |||||| |
|
|
| T |
11084527 |
agagatttctacattgctggagaaagttatgctggtcattatgttcctcaacttgcacacaatattctccaccataataaa |
11084447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 6215780 - 6215695
Alignment:
| Q |
32 |
aactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtcattatgttcctcaact |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||||| | ||||||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
6215780 |
aactggcttgagagatttccacagtataagattcgagatttcttcataactggtgaaagttatgctggccattatgtccctcaact |
6215695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 6208910 - 6208831
Alignment:
| Q |
35 |
tggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtcattatgttcctca |
114 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||||| | |||| |||| || ||||||||||| |||||||||||||| |
|
|
| T |
6208910 |
tggcttgagagatttccacagtataagactcgagatttcttcatagctggtgaaagttatgctggccattatgttcctca |
6208831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 316183 - 316145
Alignment:
| Q |
81 |
ctggagagagttatgctggtcattatgttcctcaacttg |
119 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
316183 |
ctggagaaagttatgctggacattatgttcctcaacttg |
316145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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