View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17108_high_2 (Length: 695)
Name: NF17108_high_2
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 28976185 - 28975855
Alignment:
| Q |
18 |
cctaattattctctctcatctctcacctaccacaacatcaagctcatgatcccaactctcctccatactcttctcattcttctcaatttctttgtgtact |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
28976185 |
cctaactattctctctcatctctcacctaccactacatcaatctcacgatcccaactctcctccatactcttctcattcttctgaatttctttatgtact |
28976086 |
T |
|
| Q |
118 |
agggacaaccccctctctctctaannnnnnnn----ctccctaattgagaaacttgtaatgatgggtttgagataggttttgtgaattcaattcatattt |
213 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
28976085 |
agggacaaccccctctctctctctctctaattttttctcactaattgagaaacttgtaatgatgggtttgagatagattttgtgaattcaattcatactt |
28975986 |
T |
|
| Q |
214 |
gtttggtttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaa |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
28975985 |
gtttgggttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttgtaaagaacaaagatagaatcagaaagtaagaataaaa |
28975886 |
T |
|
| Q |
314 |
aacaaaattagattttccggtgagccattag |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
28975885 |
aacaaaattagatttttcggtgagccattag |
28975855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 412 - 642
Target Start/End: Complemental strand, 28975788 - 28975558
Alignment:
| Q |
412 |
ttagatttttctatttgtaacacgactagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
511 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975788 |
ttagatttttctgtttgtaacacggctagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
28975689 |
T |
|
| Q |
512 |
tgacgaatcgggaaagaaagtaaataacttaaggtggattgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcgaatctg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28975688 |
tgacgaatcgggaaagaaagtaaataacttaaggtggactgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcaaatctg |
28975589 |
T |
|
| Q |
612 |
aagcttggtttggatgagaatggaagttaca |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28975588 |
aagcttggtttggatgagaatggaagttaca |
28975558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 44631408 - 44631346
Alignment:
| Q |
252 |
tgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaaa |
314 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44631408 |
tgttcaccatgtttattggaattttcaaagaacaaagaaagaatgagaaagtaagaatagaaa |
44631346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University