View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_20 (Length: 310)
Name: NF17108_high_20
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 26403209 - 26403500
Alignment:
| Q |
18 |
ctggcctttggtaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacgaggacatcatcaacaacaacaataacatgaatatagagaaat |
117 |
Q |
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| T |
26403209 |
ctggcctttgtaaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacaaggacatcatcaacaacaacaataacatgaatatagagaaat |
26403308 |
T |
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| Q |
118 |
caaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagat |
217 |
Q |
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| T |
26403309 |
caaatcttggtcatgttaagaagaacagcatcaatggtggtagtgcaactacaagtgatagtgtt-gtgaccaagcaacacaaaaaatggatcctaagat |
26403407 |
T |
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| Q |
218 |
gctcaaactgtatacttatgttacttatagttgtgagcaatataacagtatgttggcaagtaaaaaagcatagagaatcacaatttttaatcc |
310 |
Q |
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| T |
26403408 |
gctcaaactgtatacttatgttacttatagttgtgagcaacataacagtatgttggcaagttaaaaagcatagagaatcacaatttttaatcc |
26403500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 26395415 - 26395520
Alignment:
| Q |
152 |
tggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgt |
251 |
Q |
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| T |
26395415 |
tggtggtagtgcatctgcaaatgttggtgttggtgatcaagcaacacaaaatttggatccaaagaggctcaaacggtatacttgtgtaacttatatttgt |
26395514 |
T |
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| Q |
252 |
gagcaa |
257 |
Q |
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| T |
26395515 |
gagcaa |
26395520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 26402493 - 26402577
Alignment:
| Q |
91 |
acaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtga |
175 |
Q |
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| T |
26402493 |
acaacaataacttaaatatagaaaaatcaaatcttggttatattgagaagaaccacatgaatggtggtagagcaactacaggtga |
26402577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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