View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_3 (Length: 582)
Name: NF17108_high_3
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 202 - 559
Target Start/End: Complemental strand, 52396760 - 52396385
Alignment:
| Q |
202 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttc-----------acattcattgctaagtacaaacacactca----accggca |
286 |
Q |
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| T |
52396760 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttcttcccccaaagacattcattgctaagtaaagacacactcactcaagcggca |
52396661 |
T |
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| Q |
287 |
aaacagagtaacgccgaataacccaataaacaaagaaataaaatggcggtagcacacggtggttacgacggtgaaatcggtggctacaattctcgtctaa |
386 |
Q |
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| T |
52396660 |
aaacagagtaacgccgaataacccaataaacaaagaaataaaatggcggtagcacacggtggttacgacggtgaaatcggtggctacaattctcgtctaa |
52396561 |
T |
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| Q |
387 |
tcccatcaataaaaccagagttattcaatgacagtgcaaattccagctcttacacctacgacgacgtttcaaccgaaagaaaagaatcagtacttaccga |
486 |
Q |
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| T |
52396560 |
tcccatcaataaaaccagagttattcaatgacagtgcaaattccagctcttacacctacgacgacgtttcaaccgaaagaaaagaatcagtactaaccga |
52396461 |
T |
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| Q |
487 |
agaagaa---gaaggtgctacagcttctcacgcaattcatatcaaagaagaagttcttgaagaagacgacggtgct |
559 |
Q |
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| T |
52396460 |
agaagaagaagaaggtgctacagcttctcacgcaattcatatcaaagaagaagttcttgaagaagacgacggtgct |
52396385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 52397014 - 52396927
Alignment:
| Q |
12 |
gaagaatatatgaaacgtggctatcggtcttattttaccaaaaatggaccggtgcaaagatacatatacactgttctcacctgcttcg |
99 |
Q |
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| T |
52397014 |
gaagaaaatatgaaacgtggctattggtcttattttaccaaaaatggaccggtgcaaagatacacatacactgttctcacctgcttcg |
52396927 |
T |
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