View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_36 (Length: 247)
Name: NF17108_high_36
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 48084854 - 48085090
Alignment:
| Q |
11 |
cagaattagctatgagaggaggtccaaatggtcagtgtagtgtggaacttgagagagctgcatctttatacaatcctcaacttgttgacatgatcagatc |
110 |
Q |
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| T |
48084854 |
cagaattagctatgagaggaggtccaaatggtcagtgtagtgtggaacttgagagagctgcatccttatacaatcctcaacttgttgacatgatcagatc |
48084953 |
T |
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| Q |
111 |
actaaaccaagagattggctctgacatcttcgttgctgctgatgcttatagaatgcacatggattacattaccaaccctcaagcttatggtatgtagtag |
210 |
Q |
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| T |
48084954 |
actaaaccaagagattggctctgacatctttgttgctgctgatgcatatagaatgcacatggattacattaccaaccctcaagcttatggtatgtagtag |
48085053 |
T |
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| Q |
211 |
tgtaatgcaatattcatattcctttaaattgtttgac |
247 |
Q |
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| T |
48085054 |
tgtaatgccatattcatattcctttaaattgtttgac |
48085090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 205
Target Start/End: Complemental strand, 35376678 - 35376524
Alignment:
| Q |
51 |
tgtggaacttgagagagctgcatctttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatcttcgttgctgct |
150 |
Q |
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| T |
35376678 |
tgtggaactcgtgagagctgcctccttatataatccacaacttgtcgaaatgatcaaagaactcaacacagagattggttctgatgtcttcattgctgct |
35376579 |
T |
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| Q |
151 |
gatgcttatagaatgcacatggattacattaccaaccctcaagcttatggtatgt |
205 |
Q |
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| T |
35376578 |
aatgcacgtcaaatgcacatggattttattaccaaccctcaagcttttggtatgt |
35376524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 35358088 - 35357946
Alignment:
| Q |
63 |
gagagctgcatctttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatcttcgttgctgctgatgcttataga |
162 |
Q |
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| T |
35358088 |
gagagctgcgtccttatataatccacaacttgttcaaatgatcacacaactcaacagagagattggtgatgatgtcttcattgctgttaatgcacataaa |
35357989 |
T |
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| Q |
163 |
atgcacatggattacattaccaaccctcaagcttatggtatgt |
205 |
Q |
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| T |
35357988 |
atgcacatggattttattaccaaccctaaagcttttggtatgt |
35357946 |
T |
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