View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_39 (Length: 239)
Name: NF17108_high_39
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 21080014 - 21080235
Alignment:
| Q |
18 |
tatttcgtaagtaatattctccattttgttttgttnnnnnnntaaatttgatcaagtatttatccctgtaaaagacatgtaccttgaataagatcctcat |
117 |
Q |
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| T |
21080014 |
tatttcgtaagtaatattctccattttgttttgttaaaaaaataaatttgatcaagtatttatccctgtaaaagacatgtaccttgaataagatcctcat |
21080113 |
T |
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| Q |
118 |
acttagatgttccagctctagtcaaagcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttcacttacacaacaacattagcttttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21080114 |
acttagatgttccagctctagtcaaagcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttcactcacacaacaacattagcttttt |
21080213 |
T |
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| Q |
218 |
caattttcccttatggacaatc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
21080214 |
caattttcccttatggacaatc |
21080235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 21070202 - 21070297
Alignment:
| Q |
144 |
gcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttcacttacacaacaacattagctttttcaattttcccttatggacaatc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21070202 |
gcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttcacttacacaacaacattagctttttcaattttcccttatggacaatc |
21070297 |
T |
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