View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_40 (Length: 238)
Name: NF17108_high_40
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_40 |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: scaffold0428 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 11464 - 11651
Alignment:
| Q |
17 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactcgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11464 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatagtccactcgc |
11563 |
T |
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| Q |
117 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11564 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
11651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 4548 - 4372
Alignment:
| Q |
17 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactcgc |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
4548 |
acacaatagttttatagcaccactatagatgctatttcacaacattttgcactaactatcgtaattctgagcaatagcaatttgttcatattccactcgc |
4449 |
T |
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| Q |
117 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
204 |
Q |
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|||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4448 |
tgtagcaa-----------tattccacttgactgatattacacataatagctagcttatttagcttattacacataacggatagagga |
4372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 33282788 - 33282601
Alignment:
| Q |
17 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactcgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33282788 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatagtccactcgc |
33282689 |
T |
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| Q |
117 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
204 |
Q |
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| T |
33282688 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
33282601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 33260492 - 33260305
Alignment:
| Q |
17 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactcgc |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
33260492 |
acacaatagttttatagcaccactatagatgctatttcacaacattttgcactaactatcgtaattctgaacaatagcaatttgttcatattccactcgc |
33260393 |
T |
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| Q |
117 |
tgtagcaatatagcgctgctatttaacaagaatgatattacacataatagctagcttatttagcttattacacataacggatagagga |
204 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33260392 |
tgtagcaaaatagcgctgctatttaacaagactgatattacacataatagctagcttatttagcttattacacataacggatagagga |
33260305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 33386249 - 33386135
Alignment:
| Q |
17 |
acacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactcgc |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||| |||| |||||||||||||||| | ||||||| | |
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| T |
33386249 |
acacaatagttttatagcgccactatagaggctatttcacaacattttgaaccaaatatcgtaattttgaacaatagcaatttgttcaaattccactctc |
33386150 |
T |
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| Q |
117 |
tgtagcaatatagcg |
131 |
Q |
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| T |
33386149 |
tatagcactatagcg |
33386135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 2733025 - 2732973
Alignment:
| Q |
19 |
acaatagttttatagcgccactatagatgctatttcacaacattttgcactaa |
71 |
Q |
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|||||||| |||||||||| |||||| |||||||| ||||||||||| ||||| |
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| T |
2733025 |
acaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa |
2732973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 17442937 - 17443069
Alignment:
| Q |
15 |
tcacacaatagttttatagcgccactatagatgctatttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcatactccactc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||| |
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| T |
17442937 |
tcacacaatagttttatagcgccactatagatgctatttcacaacattttgcactaaatatcgtaattctgaacaatagcaatttgttcaaattccactt |
17443036 |
T |
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| Q |
115 |
gctgtagcaatatagcgctgctatttaacaaga |
147 |
Q |
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||| ||||| ||||| ||||||||||||||||| |
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| T |
17443037 |
gctatagcactatagggctgctatttaacaaga |
17443069 |
T |
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