View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_5 (Length: 500)
Name: NF17108_high_5
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Complemental strand, 2600837 - 2600371
Alignment:
| Q |
16 |
attaattagagaatataagtgaaaaattaatcaatattacgtcaaaaattgaaactaacatttattttgatacaatggtttgtggtttttcaaatttaac |
115 |
Q |
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| T |
2600837 |
attaattagagaatataagtgaaaaattaatcaatattacgtcaaaaattgaaactaacatttattttgataca-tggttcgtggtttttcaaatttaac |
2600739 |
T |
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| Q |
116 |
ctttattatgaaatggtgggagtaatatttcagtgatgagacattctgtctagtaattttgtgataaaaagaaaaaccagaggtgtagtaaaaaatacga |
215 |
Q |
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| T |
2600738 |
ctttattatgaaatggttggagtaatattttagtgatgagacattctgtctagtaattttgtaaaaaaaagaaaaaccagaggtgtaggaaaaaatacaa |
2600639 |
T |
|
| Q |
216 |
attaacctttgacaaaagaaacaaattaacaccactgaggttagctgaaaaatgtataactctcacacattaaatacaaagaaatgagaaattgcatatt |
315 |
Q |
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| T |
2600638 |
attaacctttgacaaaagaaacaaattaacaccactgaggttaactgaaaaatgtataactctcacacattaaatacaaagaaatgagaaattgcatatt |
2600539 |
T |
|
| Q |
316 |
cgaacccatttattagcatattgaatataacaactaactatgtacagtagaaattcctagtgnnnnnnnggtagttaataaattcctagtgtttaacaac |
415 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2600538 |
cgaacccatttattaccatattgaatataacaactaactatgtacagtagaaattcctggtgttttttttgtagttaataaattcctagtgtttaacaac |
2600439 |
T |
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| Q |
416 |
cactaaatattttagtcaacaatttaaaaaagctaccaagacatgaaaccatttttacacaagcttac |
483 |
Q |
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| T |
2600438 |
cactaaatattttagtcaacaatttaaaaaagctaccaagacatgaaaccatttttacacaagcttac |
2600371 |
T |
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