View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_high_6 (Length: 467)
Name: NF17108_high_6
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 3957813 - 3958250
Alignment:
| Q |
13 |
aaaatagaaatgatacatcattcctcaacctccatattgcccacaaaacaacatgtcaaatcaccaacaacctcatcttccctattcgattcgtacacca |
112 |
Q |
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| T |
3957813 |
aaaatagaaatgatacatcattcctcaacctccatattgcccacaaaacaacatgtcagatcaccaacaacctcatcttccctattcgattcgtacacca |
3957912 |
T |
|
| Q |
113 |
aatgaaacaaacgaatgaaagaacatagatagattcccaaaataatagtaacaagctcagaccacctgaacatctcatatcaaatagatgttgagaacat |
212 |
Q |
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| T |
3957913 |
aatgaaacaaacgaatgaaagaacatagatagattcccaaaataatagtaacaagctcagaccacctgaacatctcatatcaaatagatgttgagaacat |
3958012 |
T |
|
| Q |
213 |
tctaaaatcaaataaatgatgtacatgttcgtcatcctagtcactgtcataaaaaagcccgcagtgaagagtcatccactaaaatcacacctctactcga |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3958013 |
tctaaaatcaaataaatgatgtacatattcgtcatcctagtcactgtcataaaaaagcccgcagtgaagagttatccactaaaatcacacctctactcga |
3958112 |
T |
|
| Q |
313 |
gcggttcagcctagttagttgggagtttatgcaacgacaattgccaagagaaaacaatcatctttgaaggtgcaaagctttctttcaagaggaacgaatt |
412 |
Q |
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| T |
3958113 |
gaggttcagcctagttagttgggagtttatgcaacgacaattgccaagagaaaacaatcatctttgaaggtgcaaagctttctttcaagaggaacgaatt |
3958212 |
T |
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| Q |
413 |
ccctcattctcgaccacataatgagatggattaggaat |
450 |
Q |
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| T |
3958213 |
ccctcattctcgaccacataatgagatggattaggaat |
3958250 |
T |
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