View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17108_high_8 (Length: 429)
Name: NF17108_high_8
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 19963848 - 19963925
Alignment:
| Q |
68 |
gaaggttctgataaagaggatcatttattaatttatgaactatcaagttctgatgatgaagtagttggaaatggtaag |
145 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||| ||||| |
|
|
| T |
19963848 |
gaagcttctgataaagaggatcatttattagtttatgaactatcaagttccgatgatgaagtggttgaaaatcgtaag |
19963925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 20026568 - 20026499
Alignment:
| Q |
76 |
tgataaagaggatcatttattaatttatgaactatcaagttctgatgatgaagtagttggaaatggtaag |
145 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
20026568 |
tgataaagaggatcatttattaggttatgaactatcaagttctgatgatgaagtagttgaaaatcgtaag |
20026499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 19743167 - 19743090
Alignment:
| Q |
68 |
gaaggttctgataaagaggatcatttattaatttatgaactatcaagttctgatgatgaagtagttggaaatggtaaggct |
148 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19743167 |
gaagcttctgataaagaggatcacatagt---ttatgaactatcaagttctgatgatgaagtagttggaaatggtaaggct |
19743090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 20019751 - 20019687
Alignment:
| Q |
75 |
ctgataaagaggatcatttattaatttatgaactatcaagttctgatgatgaagtagttggaaat |
139 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20019751 |
ctgatgaagaggatcacaaattagtttatgaactatcaagttctgatgatgaagtagttggaaat |
20019687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 19968523 - 19968606
Alignment:
| Q |
68 |
gaaggttctgataaagaggatcatttattaatttatgaactatcaagttc---tgatgatgaagtagttggaaatggtaaggct |
148 |
Q |
| |
|
|||| ||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19968523 |
gaagcttctgatgaagaggatcacaaattagtttatgaactatcaagttctgatgatgatgaagtagttgaaaatggtaaggct |
19968606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 14855761 - 14855678
Alignment:
| Q |
68 |
gaaggttctgataaagaggatcatttattaatttatgaactatcaagttc---tgatgatgaagtagttggaaatggtaaggct |
148 |
Q |
| |
|
|||| ||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
14855761 |
gaagcttctgatgaagaggatcacaaattagtttatgaactatcaagttccgatgatgatgaagtagttgaaaatggtagggct |
14855678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 5372777 - 5372831
Alignment:
| Q |
246 |
tttcaatagcctcccacaaactgtaccatgatagatgttgatcacgccaagcttg |
300 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||| ||||||||||| || |||||| |
|
|
| T |
5372777 |
tttcaacagcctcccacaagctggaccatgatatatgttgatcactcccagcttg |
5372831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 10739531 - 10739482
Alignment:
| Q |
193 |
tgttcctcttctttatcttgcagcaagcttgattctaaggcttttgtgtt |
242 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
10739531 |
tgttcttcttctttatctagtagcaagcttgattccaagtcttttgtgtt |
10739482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 46142890 - 46142832
Alignment:
| Q |
246 |
tttcaatagcctcccacaaactgtaccatgatagatgttgatcacgccaagcttggaaa |
304 |
Q |
| |
|
|||||||| |||||||||| || | ||||||| |||||||||| |||||||||||||| |
|
|
| T |
46142890 |
tttcaatatcctcccacaagttggagcatgataaatgttgatcatgccaagcttggaaa |
46142832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 3030813 - 3030861
Alignment:
| Q |
99 |
tttatgaactatcaagttctgatgatgaagtagttggaaatggtaaggc |
147 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||| |||||| ||||| |
|
|
| T |
3030813 |
tttatgagctatcaagttctgatgatggagcagttgaaaatggcaaggc |
3030861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University