View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17108_low_1 (Length: 1015)
Name: NF17108_low_1
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 939; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 939; E-Value: 0
Query Start/End: Original strand, 20 - 1003
Target Start/End: Complemental strand, 10545778 - 10544795
Alignment:
| Q |
20 |
atgacctgaagtttctacatgaagatttgcattgctccaattagaagtatcattgatatcaacactagtcatgtaccataaataatcacttgcatccaat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10545778 |
atgacctgaagtttctacatgaagatttgcattgctccaattagaagtatcattgatatcaacactagtcatgtaccataaataatcacttgcatccaat |
10545679 |
T |
|
| Q |
120 |
gttaattccttctgctccaaaagttgatgtgctttgatacttccccttccattcatggtgtctttctttggctccattatccatgcccaagtgagtttat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545678 |
gttaattccttctgctccaaaagttgatgtgctttgatacttccccttccattcatggtgtctttctttggctccattatccatgcccaagtgagtttat |
10545579 |
T |
|
| Q |
220 |
tagtagaactattatcaannnnnnnctccattattgaggtttgactattaacctttgcagtattgaaaacttctttgttgcatccatcaagaacggtgac |
319 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10545578 |
tagtagaactattatcaatttttttctccattattgaggtttgactattaacctttgcagtattgaaaacttctttgttgcatccatcaagaatggtgac |
10545479 |
T |
|
| Q |
320 |
ggaccaagcaggaacaatgtatttaccatcattttgcaagtcaacatttccatcagtgttatctttatcattgctcaagaaacaaaatcttgctccaaca |
419 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545478 |
ggaccaagcaggaacaaagtatttaccatcattttgcaagtcaacatttccatcagtgttatctttatcattgctcaagaaacaaaatcttgctccaaca |
10545379 |
T |
|
| Q |
420 |
gaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataattcgtaagaaccttttcacctaatttaattgcttcat |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
10545378 |
gaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataattcgtaagtaccttttcgcctaatttaattgcttcat |
10545279 |
T |
|
| Q |
520 |
gaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatcatagtcataagatgtaataatatatggtccaccaga |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10545278 |
gaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatcatagtcataagatgttataatatatggtccaccaga |
10545179 |
T |
|
| Q |
620 |
tgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacaccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagca |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545178 |
tgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacaccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagca |
10545079 |
T |
|
| Q |
720 |
gttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgac |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545078 |
gttctatgtggagctctttcaccccatttttgaaaccatccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgac |
10544979 |
T |
|
| Q |
820 |
aataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagc |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10544978 |
aataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagc |
10544879 |
T |
|
| Q |
920 |
agcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
1003 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10544878 |
agcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
10544795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 46 - 1003
Target Start/End: Complemental strand, 9643809 - 9642849
Alignment:
| Q |
46 |
ttgcattgctccaattagaagtatcattgatatcaacactagtcatgtaccataaataatcacttgcatccaatgttaattccttctgctccaaaagttg |
145 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||| ||||| ||||| || |||| ||||||||||||| ||| | |
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|
| T |
9643809 |
ttgcattgctccaaattgaagtgtcattgatatcagcactagtcatgtaccataaatagtcactagcatctaaggttagctccttctgctccagaagctt |
9643710 |
T |
|
| Q |
146 |
atgtgctttgatacttccccttccattcatggtgtctttctttggctccattatccatgcccaagtgagtttattagtagaacta---ttatcaannnnn |
242 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||| |||||||||| | | ||||| |||||||||| ||||||||||||| |||||| |
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|
| T |
9643709 |
ctgtgctttgagacttccatttccatgtatggtgtctctctttggctctactttccattcccaagtgag---attagtagaactaacattatcactcttt |
9643613 |
T |
|
| Q |
243 |
nnctccattattgaggtttgactattaacctttgcagtattgaaaacttctttgttgcatccatcaagaacggtgacggaccaagcaggaacaatgtatt |
342 |
Q |
| |
|
| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| || | || || | || |||||||| ||||||||||| |
|
|
| T |
9643612 |
ttcaccatcattgatgtttgactattaacctttgcagtattgaaaacttcttggttgcaaccgttaataattgaaacagaccaagccggaacaatgtaaa |
9643513 |
T |
|
| Q |
343 |
taccatcattttgcaagtcaacatttccatcagtgt---tatctttatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttag |
439 |
Q |
| |
|
||||||||||| ||| ||||| || || || || ||| || | |||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9643512 |
caccatcatttttcaaatcaacccttgcaccaaggtcagtattgttgttattgctcaagaaacaaaatcttgctccactggaattagtgtatgttgttag |
9643413 |
T |
|
| Q |
440 |
tgtgattccattaccaagatccttgtcattccttgaagtataattcgtaagaaccttttcacctaatttaattgcttcatgaaggaacttaagatgcccg |
539 |
Q |
| |
|
||||| |||||| || ||||||| ||| ||||||| | ||||||| ||||| || |||||||||||||| |||||| ||||||| ||| ||||| || |
|
|
| T |
9643412 |
tgtgagtccattgccgagatcctcgtctttccttgcactataatttgtaagtacattttcacctaatttgattgctgcatgaagattcttcagatgtccc |
9643313 |
T |
|
| Q |
540 |
tatttcggttgattcaaattcccatactcgttgatcggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttc |
639 |
Q |
| |
|
|||| ||||||||||||||||||||||| | || ||||||||||||||||| ||||| | ||||| || ||||| | ||||||||||| || |||| |
|
|
| T |
9643312 |
catttaggttgattcaaattcccatactcatcaattggtgcatcatagtcatatgatgttgttatatacggcccacctgcggtgcgaccaaagtttgttc |
9643213 |
T |
|
| Q |
640 |
ctccatggtacatgtagtaattgttaaatacaccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttc |
739 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| | ||||| |
|
|
| T |
9643212 |
ctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtggaaccctttc |
9643113 |
T |
|
| Q |
740 |
accccatttttgaaaccaaccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagta |
839 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
9643112 |
accccatttttggaaccaaccaatccaattttcagtgaaaattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagta |
9643013 |
T |
|
| Q |
840 |
ttgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctt |
939 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||||||||||| || |||||||||| |||||| ||||||||||||| || |||||| | |
|
|
| T |
9643012 |
ttgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgctagagccatctgagcagcccattgaacatatgcct |
9642913 |
T |
|
| Q |
940 |
tccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
1003 |
Q |
| |
|
|||| | |||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
9642912 |
tcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
9642849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 576 - 1003
Target Start/End: Complemental strand, 279059 - 278632
Alignment:
| Q |
576 |
ggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacaccac |
675 |
Q |
| |
|
||||||||||||||||| | |||||| ||| | || ||||| | || || |||||||| ||||||||||| |||| ||||||||| | | |||||| |
|
|
| T |
279059 |
ggtgcatcatagtcatatgttgtaatgataaacgggccacccgcggttcgtccaaaatttgttcctccatgatacaagtagtaattttggagggcaccac |
278960 |
T |
|
| Q |
676 |
cattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttcagt |
775 |
Q |
| |
|
||||||| || ||||||||||| | | | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| || || |
|
|
| T |
278959 |
cattttgaaagaaacgtgcaactgaaaatgctgaatcttcagctgttctatgtggcctcctttcaccccatttttggaaccagccaacccaattctctgt |
278860 |
T |
|
| Q |
776 |
gaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacac |
875 |
Q |
| |
|
|| ||||| || ||||| || || || || || ||| ||| ||||||||| |||||||| |||| ||| |||| ||||||| ||||| | ||| |
|
|
| T |
278859 |
aaatattttagggcttttaggattgtttggcttgaaagtgtcacaataatagccattgcatgtatcgataatagtggctggagcatttttttgcttgcac |
278760 |
T |
|
| Q |
876 |
atgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccat |
975 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |||| ||||| | |||| ||| | |||| |||||||| |
|
|
| T |
278759 |
atgatccatgggacaccaatattttgagctaaagccatttcggcacaccatttaatgtatgaattcccagcttctccataatgacttatgacatctccat |
278660 |
T |
|
| Q |
976 |
attcattctcaatttgagctagaataat |
1003 |
Q |
| |
|
||||||||||||||||||| | |||||| |
|
|
| T |
278659 |
attcattctcaatttgagccaaaataat |
278632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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