View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_11 (Length: 418)
Name: NF17108_low_11
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 1207339 - 1207745
Alignment:
| Q |
1 |
ataataattggttgtcatcaatttgatcattggtgggtttatagtgtagcgcggataaatatattttgtaatgaatacttgttcccaaatttgtgccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1207339 |
ataataattggttgtcatcaatttgatcattggtgggtttatagtgtagcacggataaatatattttgtaatgaatacttgttcccaaatttgtgccatt |
1207438 |
T |
|
| Q |
101 |
tatttgaggcaattcataagtttgttcttgacggagttctaagttcaatccttctgttgcaataccaatcaggttctgatgcaaccaaaagagctgtgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1207439 |
tatttgaggcaattcataagtttgttcttgacggagttctaagttttatccttctgttgcaataccaatcaggttctgatgcaaccaaaagagctgtgcg |
1207538 |
T |
|
| Q |
201 |
tatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagccttgcttcaaaagacacctgttctcgagacactcgttcttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
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| T |
1207539 |
tatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaagacacctgttctcaagacactcgttcttaa |
1207638 |
T |
|
| Q |
301 |
ggtttgtaattactagtatttgttcatcctattgtaacttcttgatgtttttgataactaatttatttgctcttttaagagtcttattttcgactttcgt |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1207639 |
ggtttgtaattactagtatttgttcatcctcttgtaacttcttgatgtttttgttaactaatttatttgctcttttaagagtcttattttcgactttagt |
1207738 |
T |
|
| Q |
401 |
tgatgat |
407 |
Q |
| |
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||||||| |
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| T |
1207739 |
tgatgat |
1207745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 581076 - 581212
Alignment:
| Q |
178 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagccttgcttcaaaagacacct |
277 |
Q |
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||||| ||||||| |||| || |||||||||||||||||| |||||||||||||||| |||||||| || ||||||||| |||||||||||||| |||| |
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| T |
581076 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccg |
581175 |
T |
|
| Q |
278 |
gttctcgagacactcgttcttaaggtttgtaattact |
314 |
Q |
| |
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|||||||||||||| ||||| |||||| ||||||||| |
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| T |
581176 |
gttctcgagacacttgttctcaaggttcgtaattact |
581212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 1214746 - 1214837
Alignment:
| Q |
200 |
gtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagccttgcttcaaaagacacctgttctcgagacact |
291 |
Q |
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| T |
1214746 |
gtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttctcaagacact |
1214837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 1201357 - 1201479
Alignment:
| Q |
200 |
gtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagccttgcttcaaaagacacctgttctcgagacactcgttctta |
299 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||| ||||||| || | |||||| | ||| || ||||||||||| |||||| ||||||| ||||| | |
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|
| T |
1201357 |
gtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctcttggtcttactacaaaagacaccggttctcaagacactagttctca |
1201456 |
T |
|
| Q |
300 |
aggtttgtaattactagtatttg |
322 |
Q |
| |
|
||||| ||||||||||||||||| |
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| T |
1201457 |
aggttcgtaattactagtatttg |
1201479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 321
Target Start/End: Complemental strand, 8188872 - 8188721
Alignment:
| Q |
170 |
caggttctgatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagccttgcttcaaa |
269 |
Q |
| |
|
|||||||||| ||||||| | |||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||| |
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| T |
8188872 |
caggttctgaggcaaccacagaagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaa |
8188773 |
T |
|
| Q |
270 |
agacacctgttctcgagacactcgttcttaaggtttgtaattactagtattt |
321 |
Q |
| |
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|||| || |||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
8188772 |
agacgccggttctcaagacactagttcttaaggttggtaattactagtattt |
8188721 |
T |
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