View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_12 (Length: 397)
Name: NF17108_low_12
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 120 - 356
Target Start/End: Complemental strand, 5764752 - 5764516
Alignment:
| Q |
120 |
atcttcctccccttgtccctctctcctgcaactcgtcggaacaatctccaaaacacggtcgtttgtgtccgtctctcctgcaactcgtcggaaacaacct |
219 |
Q |
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| T |
5764752 |
atcttcctccccttgtccctctctcctgcaactcgtcggaacaatctccaaaacacggtcgtttgtgtccctatctcctgcaactcgtcggaaacaacct |
5764653 |
T |
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| Q |
220 |
ccaaaacatggagaaggtggccgcgaaacccgcattctctaaacgcgccgctttagagcgttataacgtcgtggttcaattttggccgctccgcgccagg |
319 |
Q |
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| T |
5764652 |
ccaaaacatggagaaggtggccgcgaaacccgcattctctaaacgcgccgctttagagcgttataacgtcgtggttcaattttggccgctccgcgccagg |
5764553 |
T |
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| Q |
320 |
agcggccgctattgacaacatagatatcttcaactgt |
356 |
Q |
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| T |
5764552 |
agcggccgctattgacaacatagatatcttcaactgt |
5764516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 21285903 - 21285943
Alignment:
| Q |
38 |
gtgggttagagctgttctgtccagccattcatgtgctaaaa |
78 |
Q |
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| T |
21285903 |
gtgggttacagctgttctcttcagccattcatgtgctaaaa |
21285943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 21472719 - 21472681
Alignment:
| Q |
299 |
ttttggccgctccgcgccaggagcggccgctattgacaa |
337 |
Q |
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| T |
21472719 |
ttttggccgctccgcgccagtagcggccgctattgacaa |
21472681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 24792345 - 24792303
Alignment:
| Q |
290 |
gtggttcaattttggccgctccgcgccaggagcggccgctatt |
332 |
Q |
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| T |
24792345 |
gtggttcatttttggccgctccgcgccgggagcggccgctatt |
24792303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 44966460 - 44966500
Alignment:
| Q |
299 |
ttttggccgctccgcgccaggagcggccgctattgacaaca |
339 |
Q |
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| T |
44966460 |
ttttggccgctccgcgccgggagcggccgcgtttgacaaca |
44966500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 325957 - 326002
Alignment:
| Q |
299 |
ttttggccgctccgcgccaggagcggccgctattgacaacatagat |
344 |
Q |
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| T |
325957 |
ttttggccgctccgcgccgggagcggccgctattaacaacagagat |
326002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 125469 - 125408
Alignment:
| Q |
167 |
ccaaaacacggtcgtttg-tgtccgtctctcctgcaactcgtcggaaacaacctccaaaaca |
227 |
Q |
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|||||| |||| |||||| ||||| | ||||| |||||||| |||||||||||||||||||| |
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| T |
125469 |
ccaaaaaacggccgtttggtgtccctttctccggcaactcgccggaaacaacctccaaaaca |
125408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 11057218 - 11057258
Alignment:
| Q |
299 |
ttttggccgctccgcgccaggagcggccgctattgacaaca |
339 |
Q |
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| T |
11057218 |
ttttggccgctccgcgccgggagcggccgctattaacaaca |
11057258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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