View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_14 (Length: 395)
Name: NF17108_low_14
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 13585580 - 13585811
Alignment:
| Q |
7 |
tcgaagaatatattcgtatttaatgttcaacacacattgaatacaattacttccgatcaaggtaacctttgagagtgag--nnnnnnnnngatagataat |
104 |
Q |
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| T |
13585580 |
tcgaaaaaaatattcgtatttaatgtccaacacacattgaatacaattacttccgatcaaagtaacctttgagagtgagaagaaaaaaaagatagataat |
13585679 |
T |
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| Q |
105 |
atactaaacaagaaaataatcaattgattagaaaccatccaaatatataagatggnnnnnnnnnnnnnnnnnacaacatccaaatatacaagatgttaat |
204 |
Q |
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| T |
13585680 |
acattaaacaagaaaataatcaattgattagaaaccatccaaatatataagatgg--------tttttttttacaacatccaaatatacaagatgttaat |
13585771 |
T |
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| Q |
205 |
tatctgcccctccacattgcacaacaatttcgaagaccgc |
244 |
Q |
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| T |
13585772 |
tatctacccctccacattgcacaacaatttcaaagaccgc |
13585811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 13585853 - 13585956
Alignment:
| Q |
276 |
ctttcttactgcacatattttgtcttccttttgacaaaaaagcctagcagcgcaatttgttgcctgtttatcttctatttatgcgtatgtaacccttgat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13585853 |
ctttcttactgcacatattttgtcttccttttgacaaaaaagcctagcagcgcaacttgttgcctgtttatcttctatttatgcgtatgtaacccttgat |
13585952 |
T |
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| Q |
376 |
atat |
379 |
Q |
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|||| |
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| T |
13585953 |
atat |
13585956 |
T |
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