View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_16 (Length: 376)
Name: NF17108_low_16
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 5016298 - 5016609
Alignment:
| Q |
15 |
agttacaacttacaatacaagcaccagagacaaaatctaaaacaacactttgagtatccaaccaagtagtcacaccaaatccatttcctactttcatatg |
114 |
Q |
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| T |
5016298 |
agttacaacttacaatacaagcaccagagacaaaatctaaaacaacactt-gagtatccaaccaagtagtcacaccaaatccatttcctactttcatatg |
5016396 |
T |
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| Q |
115 |
tgccgtttggactttggtcaaaacccttaatgcttgaattcacagtttgccaccaattggctatacttcactctaggttataattgtaacactcgtacct |
214 |
Q |
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| T |
5016397 |
tgccgtttggactttggtcaaaaccctta-tgcttgaattcacagtttgccaccaattggctatacttcactctaggttatagttgtaacactcgtacct |
5016495 |
T |
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| Q |
215 |
tatatgaatatccctcactatggaaatcaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttca |
314 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5016496 |
tatacgaatatccctcactatggaaaccaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttca |
5016595 |
T |
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| Q |
315 |
atcttctatttctt |
328 |
Q |
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|| ||||||||||| |
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| T |
5016596 |
attttctatttctt |
5016609 |
T |
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