View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17108_low_18 (Length: 338)
Name: NF17108_low_18
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 53090734 - 53090428
Alignment:
| Q |
22 |
tctaacacaaagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090734 |
tctaacacaaagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctg |
53090635 |
T |
|
| Q |
122 |
ttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090634 |
ttacattattcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttat |
53090535 |
T |
|
| Q |
222 |
tagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctccta |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090534 |
tagaatatcaaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctccta |
53090435 |
T |
|
| Q |
322 |
tcctatg |
328 |
Q |
| |
|
||||||| |
|
|
| T |
53090434 |
tcctatg |
53090428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University