View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_20 (Length: 323)
Name: NF17108_low_20
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 32029134 - 32028854
Alignment:
| Q |
11 |
atgaaagcatgttgattatcagaactcacattctcgtatttaaccattttgcttaatcaacttttagagttgcatgtcctatcctaaaagccctga-ccc |
109 |
Q |
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| T |
32029134 |
atgaaagcatgttgattgtctgaacacacattctcatatttaaccaatttgcttaatcaatttttagggttgcatgtcctatcgtaaaagccctgatccc |
32029035 |
T |
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| Q |
110 |
aaatccca---caaactgtgaaacccattcttttttatatttacacttgaaatattagttcaagtggtaagagttagtcttattgttcaagtgctaacag |
206 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32029034 |
aaatcccataacaagctgtgaaacccattcttttttatatttacacttgaaatattagttcaagtggtaagagttagtcttattgttcaagtcctaacag |
32028935 |
T |
|
| Q |
207 |
ttagccttgtaatctcaatggactcagtggtcagtgttagcacaatggtataagtaattgacataattaaagcacaaaata |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32028934 |
ttagccttgtaatctcaatggactcagtggtcagtgttagcacaatggtataagtaattgacataattaaagcacaaaata |
32028854 |
T |
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