View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_21 (Length: 318)
Name: NF17108_low_21
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8921791 - 8921990
Alignment:
| Q |
1 |
gaataagtaaattgaaaatcaatat---tacaaatattaatnnnnnnnntcttgatttttgcgaaaaacaaaatcaaggtcgtcttagacactttggtga |
97 |
Q |
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| T |
8921791 |
gaataagtaaattgaaaatcaatataattacaaatattaataaaaaaattcttgatttttgcgaacaacaaaatcaaggtcgtcttagacactttggtga |
8921890 |
T |
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| Q |
98 |
tccgttctaatattaagacttcggcgcctaaaattggatgggccacaaaatcaaactattatatatatacaaaaattatgttttaataagcactaaacac |
197 |
Q |
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| T |
8921891 |
tccattctaatattaagacttcggcccctaaaattggatgggccacaaaaataaactattatatatatacaaaaattatgttttaataagcactaaacac |
8921990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 8922071 - 8922163
Alignment:
| Q |
213 |
tatgtttataacattttattaatnnnnnnngtattaatacaacatggtacataaaataagtagtggaactagctaccaatgtagttatccttg |
305 |
Q |
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| T |
8922071 |
tatgtttataacatttcattaataaaaaaagtattaatacaacatggtacataaaataagtagtggaactagctaccaatgtagttatccttg |
8922163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 12025000 - 12024944
Alignment:
| Q |
131 |
ttggatgggccacaaaatcaaactattatatatatacaaaaattatgttttaataag |
187 |
Q |
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| T |
12025000 |
ttgggtgggccacaaaaataaactataatataaatacaaaatttatgttataataag |
12024944 |
T |
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