View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_3 (Length: 695)
Name: NF17108_low_3
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 28976185 - 28975855
Alignment:
| Q |
18 |
cctaattattctctctcatctctcacctaccacaacatcaagctcatgatcccaactctcctccatactcttctcattcttctcaatttctttgtgtact |
117 |
Q |
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| T |
28976185 |
cctaactattctctctcatctctcacctaccactacatcaatctcacgatcccaactctcctccatactcttctcattcttctgaatttctttatgtact |
28976086 |
T |
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| Q |
118 |
agggacaaccccctctctctctaannnnnnnn----ctccctaattgagaaacttgtaatgatgggtttgagataggttttgtgaattcaattcatattt |
213 |
Q |
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| T |
28976085 |
agggacaaccccctctctctctctctctaattttttctcactaattgagaaacttgtaatgatgggtttgagatagattttgtgaattcaattcatactt |
28975986 |
T |
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| Q |
214 |
gtttggtttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaa |
313 |
Q |
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| T |
28975985 |
gtttgggttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttgtaaagaacaaagatagaatcagaaagtaagaataaaa |
28975886 |
T |
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| Q |
314 |
aacaaaattagattttccggtgagccattag |
344 |
Q |
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| T |
28975885 |
aacaaaattagatttttcggtgagccattag |
28975855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 412 - 642
Target Start/End: Complemental strand, 28975788 - 28975558
Alignment:
| Q |
412 |
ttagatttttctatttgtaacacgactagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
511 |
Q |
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| T |
28975788 |
ttagatttttctgtttgtaacacggctagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
28975689 |
T |
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| Q |
512 |
tgacgaatcgggaaagaaagtaaataacttaaggtggattgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcgaatctg |
611 |
Q |
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| T |
28975688 |
tgacgaatcgggaaagaaagtaaataacttaaggtggactgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcaaatctg |
28975589 |
T |
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| Q |
612 |
aagcttggtttggatgagaatggaagttaca |
642 |
Q |
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| T |
28975588 |
aagcttggtttggatgagaatggaagttaca |
28975558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 44631408 - 44631346
Alignment:
| Q |
252 |
tgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaaa |
314 |
Q |
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| T |
44631408 |
tgttcaccatgtttattggaattttcaaagaacaaagaaagaatgagaaagtaagaatagaaa |
44631346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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