View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_31 (Length: 278)
Name: NF17108_low_31
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 23173358 - 23173113
Alignment:
| Q |
24 |
cggatgctgcgctgctggttttttgt--tcagcagctgtgctgcctggggtttagcagtcatgctgctgctgctgttttggaggggcagttcagctgttg |
121 |
Q |
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| T |
23173358 |
cggaagctgcgctgctggttttttgtgttcagcagctgtgctgcctggg-tttagcagccgtgctgctgctgctgttttggaggggcagtccagctgttg |
23173260 |
T |
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| Q |
122 |
ccttgtgttgtggtgcagcagctgtgctgtctgagtggtggcagctcgttagaaggtccgattgtctaggtgttgaagcaggggtatgcttgtggttgtg |
221 |
Q |
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| T |
23173259 |
ccttgtgttttggtgcagcagctgtgttgtttgagtggaggcagctcgttagtaggtccgattgtctaggtgttgaagcaggggtatgcttgtggttgtg |
23173160 |
T |
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| Q |
222 |
tcataagtatatccttgcgtcattactctattggctggtttcctttg |
268 |
Q |
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| T |
23173159 |
tcataagtatatgcttgcgtcattactctattggttggtttcctttg |
23173113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 25829556 - 25829405
Alignment:
| Q |
117 |
tgttgccttgtgttgtggtgcagcagctgtgctgtctgagtggtggcagctcgttagaaggtccgattgtctaggtgttgaagcaggggtatgcttgtgg |
216 |
Q |
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| T |
25829556 |
tgttgtcttttgttttggtgcagcagctgtgttgtttgagtggaggcagctctttagtaggtccgattgtctaggtgttgaagcaggggtatgcttgtgg |
25829457 |
T |
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| Q |
217 |
ttgtgtcataagtatatccttgcgtcattactctattggctggtttcctttg |
268 |
Q |
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| T |
25829456 |
ttgtgtcataagtatatgcttgcgtcattactcttttggttggtttcctttg |
25829405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 25829614 - 25829563
Alignment:
| Q |
83 |
tgctgctgctgctgttttggaggggcagttcagctgttgccttgtgttgtgg |
134 |
Q |
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| T |
25829614 |
tgctgttgctgctgttttggaggggcagtccagctgttgccttgtggtgtgg |
25829563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 42442205 - 42442148
Alignment:
| Q |
211 |
ttgtggttgtgtcataagtatatccttgcgtcattactctattggctggtttcctttg |
268 |
Q |
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| T |
42442205 |
ttgtggttttgtcataagtatatgcttgtgtcattactctattgggttgtttcctttg |
42442148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 41378413 - 41378355
Alignment:
| Q |
190 |
ggtgttgaagcaggggtatgcttgtggttgtgtcataagtatatccttgcgtcattact |
248 |
Q |
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| T |
41378413 |
ggtgttgacgcaatggtatgcttgtggttatgtcttaggtatatgcttgcgtcattact |
41378355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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