View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17108_low_36 (Length: 267)
Name: NF17108_low_36
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_36 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 13373495 - 13373244
Alignment:
| Q |
16 |
caaaggttggaagcatggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13373495 |
caaaggttggaagcatggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatga |
13373396 |
T |
|
| Q |
116 |
tctcgagaattattgctcaaagatgatcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactctgataccatggttgccgac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13373395 |
tctcgagaattattgctcaaagatgatcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactctgataccatggttgcccac |
13373296 |
T |
|
| Q |
216 |
gaacacttcttgatccgtattcctgatgccttaccacttgatgccgctgctc |
267 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13373295 |
gaacacttcgtgatccgtattcctgatgccttaccacttgatgccgctgctc |
13373244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 13379288 - 13379048
Alignment:
| Q |
19 |
aggttggaagcatggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatct |
118 |
Q |
| |
|
|||| ||||||| ||||| ||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
13379288 |
aggtgggaagcaaggtgaaaaacatcaaagttggagatagggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatct |
13379189 |
T |
|
| Q |
119 |
cgagaattattgctcaaagatgatcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactctgataccatggttgccgacgaa |
218 |
Q |
| |
|
||| |||||||||||||||||||| | ||||| | |||||||| ||||||| || ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
13379188 |
cgaaaattattgctcaaagatgattcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaa |
13379089 |
T |
|
| Q |
219 |
cacttcttgatccgtattcctgatgccttaccacttgatgc |
259 |
Q |
| |
|
||||| | |||||||||| ||||||||| |||||||||| |
|
|
| T |
13379088 |
cactttattgtccgtattcccgatgccttatcacttgatgc |
13379048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 13454249 - 13454146
Alignment:
| Q |
24 |
ggaagcatggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgaga |
123 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||| || ||| |||||| || || ||||||||||||| ||||| |||| |||| |||| |
|
|
| T |
13454249 |
ggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgaga |
13454150 |
T |
|
| Q |
124 |
atta |
127 |
Q |
| |
|
|||| |
|
|
| T |
13454149 |
atta |
13454146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 28430403 - 28430579
Alignment:
| Q |
42 |
ttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgagaattattgctcaaagatga |
141 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||| || |||||| ||||| || |||| ||| |
|
|
| T |
28430403 |
ttcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtga |
28430502 |
T |
|
| Q |
142 |
tcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactctgataccatggttgccgacgaa |
218 |
Q |
| |
|
| |||||||| || |||||||| ||||||| || |||||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
28430503 |
ttctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaa |
28430579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University