View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17108_low_39 (Length: 253)

Name: NF17108_low_39
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17108_low_39
NF17108_low_39
[»] chr3 (8 HSPs)
chr3 (1-234)||(35934788-35935020)
chr3 (2-233)||(35927976-35928203)
chr3 (5-106)||(35915014-35915115)
chr3 (2-106)||(35910576-35910680)
chr3 (1-106)||(35921382-35921487)
chr3 (2-106)||(35940352-35940456)
chr3 (184-234)||(35915189-35915239)
chr3 (195-233)||(35921571-35921609)
[»] chr1 (2 HSPs)
chr1 (42-86)||(6208979-6209023)
chr1 (44-102)||(6178241-6178299)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35934788 - 35935020
Alignment:
Q  1 agcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35934788 agcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact 35934887  T
Q  101 gcatatattttataatgataaattggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttc 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35934888 gcatatattttataatgataaattggttaga-tgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcataccttc 35934986  T
Q  201 actccaagcatattggttacggtataatgttttt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  35934987 actccaagcatattggttacggtataatgttttt 35935020  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 35927976 - 35928203
Alignment:
Q  2 gcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg 101  Q
    ||||| || ||||||||||  || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  35927976 gcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactg 35928075  T
Q  102 catatattttataatgataaattggttagactgttcatgtct---cttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttacct 198  Q
    |  |||||| ||||||||||| |||| ||  | |||||||||     ||||||||| ||  |||||  |||| ||  |||||   |||||||| | ||||    
T  35928076 c--atatttcataatgataaactggtaag-ttattcatgtctaagaataaatgcatcat-aagaaacaatttcattctatcg---atgattgtttcacct 35928168  T
Q  199 tcactccaagcatattggttacggtataatgtttt 233  Q
    ||| |||||||||||||||||||||||| ||||||    
T  35928169 tcagtccaagcatattggttacggtatagtgtttt 35928203  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 35915014 - 35915115
Alignment:
Q  5 gtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcat 104  Q
    ||||||||||||||||  || | ||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||||||||    
T  35915014 gtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcat 35915113  T
Q  105 at 106  Q
    ||    
T  35915114 at 35915115  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 35910576 - 35910680
Alignment:
Q  2 gcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg 101  Q
    ||||| ||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||  || || ||||    
T  35910576 gcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactg 35910675  T
Q  102 catat 106  Q
    |||||    
T  35910676 catat 35910680  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 35921382 - 35921487
Alignment:
Q  1 agcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaact 100  Q
    ||||||||||||||||||||  || | |||||| || | ||||||||||||||||||||| || ||||||||||| || |||||||||| |||||| |||    
T  35921382 agcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccact 35921481  T
Q  101 gcatat 106  Q
    ||||||    
T  35921482 gcatat 35921487  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 35940352 - 35940456
Alignment:
Q  2 gcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg 101  Q
    ||||| || |||||||||| ||| | ||||||||| ||||||||||||||||||||||| | |||||||||||| || ||||||||||  || || ||||    
T  35940352 gcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactg 35940451  T
Q  102 catat 106  Q
    |||||    
T  35940452 catat 35940456  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 35915189 - 35915239
Alignment:
Q  184 atgattgtcttaccttcactccaagcatattggttacggtataatgttttt 234  Q
    |||||||||| ||||||| ||||||||||| |||| |||||||||||||||    
T  35915189 atgattgtctcaccttcattccaagcatatgggttgcggtataatgttttt 35915239  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 35921571 - 35921609
Alignment:
Q  195 accttcactccaagcatattggttacggtataatgtttt 233  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  35921571 accttcattccaagcatatgggttacggtataatgtttt 35921609  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
Q  42 tgtttgagtaggaaaatcccactcctgctggagactctaagaaga 86  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  6208979 tgtttgaataggaaaatccaactcctgctggagactctaaaaaga 6209023  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 6178241 - 6178299
Alignment:
Q  44 tttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgc 102  Q
    ||||| || |||||||| ||||||||||||||||||| |||||  |||||||| |||||    
T  6178241 tttgaataagaaaatccaactcctgctggagactctaggaagataatatttgccactgc 6178299  T

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