View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_44 (Length: 242)
Name: NF17108_low_44
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 18094094 - 18093883
Alignment:
| Q |
14 |
cataggcaacattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
113 |
Q |
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| T |
18094094 |
cataggcaacattctaatagccaaaggcaagccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
18093995 |
T |
|
| Q |
114 |
ctgtccaaaaacctttctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttg |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18093994 |
ttgtccaaaaacctttctggtataaaaacattagcattatcccatttatttgggtctctaccaatcacccatgcattaaccaacacttgtgcatcttttg |
18093895 |
T |
|
| Q |
214 |
gaataatgtatt |
225 |
Q |
| |
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|||||||||||| |
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| T |
18093894 |
gaataatgtatt |
18093883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 18104102 - 18103893
Alignment:
| Q |
14 |
cataggcaacattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttca |
113 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18104102 |
cataggcaatattctaatagccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaacttca |
18104003 |
T |
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| Q |
114 |
ctgtccaaaaacctttctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttg |
213 |
Q |
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| T |
18104002 |
ctatccaaaaacctctctggtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttg |
18103903 |
T |
|
| Q |
214 |
gaataatgta |
223 |
Q |
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|||||||||| |
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| T |
18103902 |
gaataatgta |
18103893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 23244719 - 23244653
Alignment:
| Q |
44 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
110 |
Q |
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||||||||| |||||||||||||| |||||||| | ||| | |||||| ||||| ||||||||||| |
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| T |
23244719 |
accaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
23244653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 1370407 - 1370354
Alignment:
| Q |
164 |
tgggtctctaccaataacccatgcattaaccaacacttgtgcatcttttggaat |
217 |
Q |
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|||||||||||||||| ||||| ||||||| || | |||||||||||| ||||| |
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| T |
1370407 |
tgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaat |
1370354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 23346848 - 23346803
Alignment:
| Q |
45 |
ccaggacaaattcttcttccagacccaaatggaataagctcaaaat |
90 |
Q |
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||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
23346848 |
ccaggacaaattcttctaccagcaccaaatggaataagttcaaaat |
23346803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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