View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17108_low_6 (Length: 563)

Name: NF17108_low_6
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17108_low_6
NF17108_low_6
[»] chr4 (4 HSPs)
chr4 (18-231)||(45781364-45781589)
chr4 (423-556)||(45780970-45781102)
chr4 (19-178)||(14565115-14565274)
chr4 (254-321)||(45781204-45781270)
[»] chr8 (1 HSPs)
chr8 (19-227)||(441192-441401)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-178)||(252101-252260)
[»] chr2 (4 HSPs)
chr2 (274-320)||(39107049-39107095)
chr2 (494-556)||(39106814-39106876)
chr2 (493-556)||(36548099-36548162)
chr2 (183-226)||(39107227-39107270)
[»] chr5 (1 HSPs)
chr5 (493-556)||(24045735-24045798)
[»] chr3 (2 HSPs)
chr3 (493-535)||(38340696-38340738)
chr3 (495-535)||(15511544-15511584)
[»] chr7 (1 HSPs)
chr7 (495-535)||(34366137-34366177)
[»] chr1 (2 HSPs)
chr1 (495-535)||(13055914-13055954)
chr1 (495-535)||(50977509-50977549)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 45781589 - 45781364
Alignment:
Q  18 aggtgcttccaaactcacgtttacaacaatcaaatgcaatttgatcaaaatatttatgtttagctttaaaaaaggtaaattgtttttgaatagcaaccac 117  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  45781589 aggtgcttccaaactcacgtttacaacaatcaaacacaattttatcaaaatatttatgtttgacttaaaaaaaggtaaattgtttctgaatagcaaccac 45781490  T
Q  118 acgtttatcagactctaatatttaaagcttttgcggtaaaccaaatcaattctacatttttgttaaacaat------------tatattatataatattt 205  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||||||||            ||||||||||||||||     
T  45781489 acgtttaccagactctaacatttgaagcttttgcggtgaaccaaatcaattctatatttttattaaacaattctacactctagtatattatataatattc 45781390  T
Q  206 cagtttgtctattatgtccttgcttt 231  Q
    ||||||||||||||||||||||||||    
T  45781389 cagtttgtctattatgtccttgcttt 45781364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 423 - 556
Target Start/End: Complemental strand, 45781102 - 45780970
Alignment:
Q  423 ttttgtgttaacactccggttatcatggaaaagggatcctgatattccagagttcagcggttggcatgtgagttcaaatgattatctaaaatatgaatga 522  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  45781102 ttttgtgttaacactc-gtttatcatggaaaagggatcctgatatttcagagttcggcggttggcatgtgagttcaaataattatctaaaatatgaatga 45781004  T
Q  523 gatatttagtttttagtataatttaaagaataat 556  Q
    ||||||||||||||||||||||||||||||||||    
T  45781003 gatatttagtttttagtataatttaaagaataat 45780970  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 14565274 - 14565115
Alignment:
Q  19 ggtgcttccaaactcacgtttacaacaatcaaatgcaatttgatcaaaatatttatgtttagctttaaaaaaggtaaattgtttttgaatagcaaccaca 118  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||  ||    
T  14565274 ggtgcttccaaactcacgtctacaacattcaaacgcaatttgatcaaaatatttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgca 14565175  T
Q  119 cgtttatcagactctaatatttaaagcttttgcggtaaaccaaatcaattctacattttt 178  Q
    |||||| ||||||||| ||||  |||||||| |||| | |||||||||||||||| ||||    
T  14565174 cgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacactttt 14565115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 45781270 - 45781204
Alignment:
Q  254 aaccatgcttccagtcatttttgttttactcgcaaaatcatgcttataatatggattttatttggttc 321  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  45781270 aaccatgcttctagtaatttttgttttactcgcaaaatcatgcttataata-gaattttatttggttc 45781204  T

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Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 441401 - 441192
Alignment:
Q  19 ggtgcttccaaactcacgtttacaacaatcaaatgcaatttgatcaaaatatttatgtttagctttaaaaaa-ggtaaattgtttttgaatagcaaccac 117  Q
    ||||||||||||||||| | ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| || || ||||||||  |    
T  441401 ggtgcttccaaactcacatctacaacattcaaacgcaatttgatcaaaatatttttgtttggctttaaaaaacggtaaattgcttctggatagcaactgc 441302  T
Q  118 acgtttatcagactctaatatttaaagcttttgcggtaaaccaaatcaattctacatttttgttaaacaattatattatataatatttcagtttgtctat 217  Q
    ||||||| ||||||||| ||||  |||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  441301 acgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacacttttgttaaacagttatattatataatattccagtttgtctat 441202  T
Q  218 tatgtccttg 227  Q
    | ||||||||    
T  441201 tttgtccttg 441192  T

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Target: scaffold0005 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 252101 - 252260
Alignment:
Q  19 ggtgcttccaaactcacgtttacaacaatcaaatgcaatttgatcaaaatatttatgtttagctttaaaaaaggtaaattgtttttgaatagcaaccaca 118  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||  ||    
T  252101 ggtgcttccaaactcacgtctacaacattcaaacgcaatttgatcaaaatatttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgca 252200  T
Q  119 cgtttatcagactctaatatttaaagcttttgcggtaaaccaaatcaattctacattttt 178  Q
    |||||| ||||||||| ||||  |||||||| |||| | |||||||||||||||| ||||    
T  252201 cgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacactttt 252260  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 39107095 - 39107049
Alignment:
Q  274 ttgttttactcgcaaaatcatgcttataatatggattttatttggtt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39107095 ttgttttactcgcaaaatcatgcttataatatggattttatttggtt 39107049  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 494 - 556
Target Start/End: Complemental strand, 39106876 - 39106814
Alignment:
Q  494 gttcaaatgattatctaaaatatgaatgagatatttagtttttagtataatttaaagaataat 556  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||| || ||||||||| |||||    
T  39106876 gttcaaataattatctaaaataagaatgagatattttgtttttaatacaatttaaaggataat 39106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 556
Target Start/End: Original strand, 36548099 - 36548162
Alignment:
Q  493 agttcaaatgattatctaaaatatgaatgagatatttagtttttagtataatttaaagaataat 556  Q
    |||| |||| ||||||| |||||||||| |||||||||||||| | ||||||| |||| |||||    
T  36548099 agttaaaataattatctgaaatatgaataagatatttagttttaaatataattaaaaggataat 36548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 39107270 - 39107227
Alignment:
Q  183 aacaattatattatataatatttcagtttgtctattatgtcctt 226  Q
    |||||||||||||||||| | ||||| |||||||||||||||||    
T  39107270 aacaattatattatataacacttcaggttgtctattatgtcctt 39107227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 556
Target Start/End: Original strand, 24045735 - 24045798
Alignment:
Q  493 agttcaaatgattatctaaaatatgaatgagatatttagtttttagtataatttaaagaataat 556  Q
    |||| |||| ||||||||||||||||||||||||||||||||| | | ||||| |||| |||||    
T  24045735 agttaaaataattatctaaaatatgaatgagatatttagttttaaatctaattaaaaggataat 24045798  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 38340696 - 38340738
Alignment:
Q  493 agttcaaatgattatctaaaatatgaatgagatatttagtttt 535  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||    
T  38340696 agttcaaataattatctaaaataagaaagagatatttagtttt 38340738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 15511584 - 15511544
Alignment:
Q  495 ttcaaatgattatctaaaatatgaatgagatatttagtttt 535  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  15511584 ttcaaatgattatctaaattaagaatgagatatttaatttt 15511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 34366177 - 34366137
Alignment:
Q  495 ttcaaatgattatctaaaatatgaatgagatatttagtttt 535  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  34366177 ttcaaatgattatctaaattaagaatgagatatttaatttt 34366137  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 13055914 - 13055954
Alignment:
Q  495 ttcaaatgattatctaaaatatgaatgagatatttagtttt 535  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  13055914 ttcaaatgattatctaaattaagaatgagatatttaatttt 13055954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 50977549 - 50977509
Alignment:
Q  495 ttcaaatgattatctaaaatatgaatgagatatttagtttt 535  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  50977549 ttcaaatgattatctaaattaagaatgagatatttaatttt 50977509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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