View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17108_low_9 (Length: 456)
Name: NF17108_low_9
Description: NF17108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17108_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 11781926 - 11782349
Alignment:
| Q |
11 |
taatactatatgagaaatgtatgattggaagaggcaattatagtt-ggtgcaaataagtttaattttaaagtattctaaagctactcttacataagtttg |
109 |
Q |
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| T |
11781926 |
taatactatatgagaaatgtatgattggaagaggcaattatagtttggtgcaaataagtttaattttaaagtattctaaggctactcttacataagtttg |
11782025 |
T |
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| Q |
110 |
gaatgaaacgctcaagagtttcaatctaacaagagaagtaataggatatttttaatctgcataaatgtgtaatcaagggactgagacatgaaacaattgt |
209 |
Q |
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| T |
11782026 |
gaatgaaacgctcaagagtttcaatctaacaagagaaggaataggatatttttaatctgcataaatgtgtaatcaagggactgagacatgaaacaattgt |
11782125 |
T |
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| Q |
210 |
ctcttgtctcatgtttttgattttccatatttgggtgatttttgcactgtagtcgtcacctttctccatccctaactttttccaccgccgtcttcaacct |
309 |
Q |
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| T |
11782126 |
ctcttgtctcatgtttttgattttccatatttgggtgatttttgcactctagtcgtcacctttccccatccctaac-ttttccaccgccatcttcaacct |
11782224 |
T |
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| Q |
310 |
tttaaccatggattttctcaagcttccaccccgcaaactaattaaaccaccacaaacagatctcattcttaagcctcaaaagaaaccacagcgtactttt |
409 |
Q |
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| T |
11782225 |
tttaaccatggatttactcaagcttccaccccgcaaac----taaaccaccacaaacagatctcattcttaagcctcaaaagaaaccacaacgtactttt |
11782320 |
T |
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| Q |
410 |
gcatgcttagtttaattgaaaggaaaaaa |
438 |
Q |
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| T |
11782321 |
gcatgcttagtttaattgaaaggaaaaaa |
11782349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 11781140 - 11781198
Alignment:
| Q |
61 |
aaataagtttaattttaaagtattctaaagctactcttacataagtttggaatgaaacg |
119 |
Q |
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| T |
11781140 |
aaataagtttaactttgaagtattccaaggctactcctacataagttagaaatgaaacg |
11781198 |
T |
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