View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17109_high_2 (Length: 422)
Name: NF17109_high_2
Description: NF17109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17109_high_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 24 - 422
Target Start/End: Original strand, 418547 - 418941
Alignment:
| Q |
24 |
tgggattccaatataaatgttctcagctataaatcaaggatgtgggaatcccaattttcataacaaagtttcacatacatgatcactccatttttgtggt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
418547 |
tgggattccaatataaatgttctcagctataaatcaaagatgtgggaatcccaattttcataacaaaatttcacatacatgatcactccatttttgtggt |
418646 |
T |
|
| Q |
124 |
nnnnnnngagtacaagacaaaaggaaaataaataattcattacctaaaaaatgaatgtgtgtgttaatagcatgcattgcatagggcctgaacaacccgt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
418647 |
aaaaaaagagtacaagacaaaaggaaaataaataattcattacctaaaaaatgaatgtgtgtgttaatagcatgca-----tagggcctgaacaacccgt |
418741 |
T |
|
| Q |
224 |
gtacagctgctgccaccacactctgatcactcaaacagacacctactatttccgggtaaatacaaattcatggggccattttcctcttctacgctttacc |
323 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
418742 |
gttcagctgctgccaccacactctgatcactcaaacagacacctactatttccgggtaaatacaaattgatggggccattttcctcttctacgctttacc |
418841 |
T |
|
| Q |
324 |
ataactattattactttcnnnnnnnnnnactgcagttaaa-cccgaccatatcataaatcaagtagaacactctgtattccacattttcatttgttacta |
422 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418842 |
ataactattattactttcttttttttttactgcagttaaaccccgaccatatcataaatcaagtagaacactctgtattccacattttcatttgttacta |
418941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University