View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17109_low_1 (Length: 1121)
Name: NF17109_low_1
Description: NF17109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17109_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 976; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 976; E-Value: 0
Query Start/End: Original strand, 15 - 1102
Target Start/End: Original strand, 8251949 - 8253036
Alignment:
| Q |
15 |
gaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
8251949 |
gaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttccttaatacaaagaataagcggacacttct |
8252048 |
T |
|
| Q |
115 |
ccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaaga |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8252049 |
ccctcaccaactgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaacacccacaaaga |
8252148 |
T |
|
| Q |
215 |
ccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaacacatcaaa |
314 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8252149 |
ccaccaccccgacctccctccacgccctcacttcctcaactcacttcccttgcccatcaccttatttattttttcttctcacactagacaacacatcaaa |
8252248 |
T |
|
| Q |
315 |
catattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaaccag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8252249 |
catattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaaccag |
8252348 |
T |
|
| Q |
415 |
ttctgccactcattattaacttacgactgagaagcactacggtctttagccggaagtcttgcaatatgcctcatactttgtgctgtatgacgcagataac |
514 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8252349 |
ttctgccactcattattaactgacgactgagaagcactacggtctttagccggaagtcttgcaatatgcctcatactttgtgccgtatgacgcagataac |
8252448 |
T |
|
| Q |
515 |
cagctcccttttgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcacctctctctccgacaagctt |
614 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8252449 |
caactcccttttgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcacctccctctccgacaagctt |
8252548 |
T |
|
| Q |
615 |
ttggctttttaaaaaatccaaactccaaggacctgaatttgctgaacgaccccttcccggaggacaagatgttgtgcgttgtataattctcggaccttgc |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8252549 |
ttggctttttaaaaaatccaaactccaaggacccgaatttgctgaacgaccccttcccgaaggacaagatgttgtgcgttgtataattctcggacctcgc |
8252648 |
T |
|
| Q |
715 |
aataaccgatctcgcctactgccccctccaacagaaacacttgcgtcaccatgattttcacctaaaacattaataatgaccaattttccactatcaaccg |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8252649 |
aataaccgatctcgcctactgccccctccaacagaaacacttgcgtcaccatgattttcacctgaaacattaataatggccaattttccactatcaaccg |
8252748 |
T |
|
| Q |
815 |
atgcaccagcaacatgaacaggctgctccccttcattattgtgtatcgaagatttacttggtaaggaagtgcccacattaattaaaggaatggctgaaac |
914 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8252749 |
atgcaccagcaacatgaacaggttgttccccttcattattgtgtatcgaagatttacttggtaaggaagtgcccacattaattaaaggaatggctgaaac |
8252848 |
T |
|
| Q |
915 |
ttcaaataaatgatttggatccttctcaaaattagcgctagaaccattgcctacannnnnnnngttagcgctagaaccattgccttgagaaacatttctt |
1014 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8252849 |
ttcaaataaatgatttggttccttctcaaaattagcgctagaaccattgcctacattttttttgttagcgctagaaccattgccttgagaaacatttctt |
8252948 |
T |
|
| Q |
1015 |
ttatcaaatgagttagacacaccacctacatgcccctcttcgtgataatcctctaaaatatgtttcaaaaattcatcaacctctcgtc |
1102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
8252949 |
ttatcaaatgagttagacacaccacctacatgcccctcttcgtgataatcctctgaaatatgtctcaaaaattcatcaacctctcgtc |
8253036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 31121360 - 31121326
Alignment:
| Q |
114 |
tccctcaccaattgtctcacctccctcctcttctc |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31121360 |
tccctcaccaattgtctcacctccctcctcttctc |
31121326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 44894117 - 44894556
Alignment:
| Q |
15 |
gaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactttt |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||| | ||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| || | |
|
|
| T |
44894117 |
gaataaccaacatttgcatcgctccaaatagatttacataacatatcatcaaacataacacactttgtttcctgaatacatagaataaaaggacttttct |
44894216 |
T |
|
| Q |
115 |
ccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaaga |
214 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||||||| | | ||| ||| | |
|
|
| T |
44894217 |
ccgtcaccaactgtctcacctccctcctcttctcaaaacctcccaaaccccgaacgttccatgaaatgagcttcatttaa---aaaaatctacacccact |
44894313 |
T |
|
| Q |
215 |
ccaccacc-----ccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaacaca |
309 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||| ||| |||||||||||| | || | |||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
44894314 |
ccaccaccaaaaaccgacctacctccactcccacacccccttaactcacttccccttcccaacaccctctttattttttcgtctcagactagacaaaaca |
44894413 |
T |
|
| Q |
310 |
tcaaacatattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcacca |
409 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||| ||| ||||| || || | |||||||||||||||||||| |
|
|
| T |
44894414 |
tcaaacatattattattatctccgccaaattttagtccaatctcctttcctatccccgtaacatcctcctgtgccactcgatcagtaccatgaagcacca |
44894513 |
T |
|
| Q |
410 |
accagttctgccactcattattaacttacgactgagaagcact |
452 |
Q |
| |
|
|||| |||| ||| ||||||||||| | ||||||||| |||| |
|
|
| T |
44894514 |
accaattctcccagtcattattaacagatgactgagaaacact |
44894556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 19156761 - 19157178
Alignment:
| Q |
15 |
gaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggacactttt |
114 |
Q |
| |
|
||||||| |||||||| |||||||| || | | |||||| ||||||| |||| || |||| || | |||||||||||||||||||| |||||||| | |
|
|
| T |
19156761 |
gaataacaaacatttgggtcgccccaaatggtttgacacatcatatcatcaaaattaacacatttggattcctgaatacaaagaataaaaggacacttct |
19156860 |
T |
|
| Q |
115 |
ccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaatacccacaaaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| ||||| ||||||||| | | || | |||||| | |
|
|
| T |
19156861 |
acctcaccaattgtctcacctccctcctcttttcaaaactccccagaccccttacattccatgaaataagcttcattaaaacaactgaaacccac-tcca |
19156959 |
T |
|
| Q |
215 |
ccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttattttttcttctcacactagacaacacatcaaa |
314 |
Q |
| |
|
||||| || ||| ||| |||||||||| || ||||||||||||||| || | ||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19156960 |
ccacctaccactcctttctcgacaccctcaccacc-caactcacttccctttcccaacaccctctttattttttggtctcacactagataacacatcaaa |
19157058 |
T |
|
| Q |
315 |
catattatttttatcccctgcaaattttatcccaatctccttccctatcccccgaacgtcctctgttgttacacaatcagtaccatgaagcaccaaccag |
414 |
Q |
| |
|
|||| ||||||| || || |||||| | |||| |||||||||| | || ||||||||| | | || |||| |||||||||||||||||||| |
|
|
| T |
19157059 |
cataatatttttgtctccattaaatttgagaccaagttccttccctaactccttaacgtcctcattagccactttatcaataccatgaagcaccaaccag |
19157158 |
T |
|
| Q |
415 |
ttctgccactcattattaac |
434 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
19157159 |
ttttgccaatcattattaac |
19157178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 12786890 - 12786977
Alignment:
| Q |
280 |
ttattttttcttctcacactagacaacacatcaaacatattatttttatcccctgcaaattttatcccaatctccttccctatccccc |
367 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||| ||||||||||||||| |||||| | |||| | ||||||||||||||| |
|
|
| T |
12786890 |
ttattttttcttccctccctagacaacacatcaaacagattatttttatccccattaaatttaagtccaaccgccttccctatccccc |
12786977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 20506995 - 20506957
Alignment:
| Q |
396 |
accatgaagcaccaaccagttctgccactcattattaac |
434 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20506995 |
accatgaagcaccaaccagttttgccactcattattaac |
20506957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 13154307 - 13154231
Alignment:
| Q |
257 |
acttcccttgcctatcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
333 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||| ||| | |||||||||||||| ||||||| || |||||| |
|
|
| T |
13154307 |
acttccctttcccatctccctctttattttttcttcccacccctgacaacacatcaaatttattattcttgtcccct |
13154231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 33096280 - 33096217
Alignment:
| Q |
270 |
atcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
333 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||| ||| |||||| ||||||||| |
|
|
| T |
33096280 |
atcaccctctttattttttcttcccgcacctgacaacacatcgaactgattattcttatcccct |
33096217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 21582401 - 21582457
Alignment:
| Q |
270 |
atcaccctctttattttttcttctcacactagacaacacatcaaacatattattttt |
326 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
21582401 |
atcaccctctttataatttcttcccacccttgacaacacatcaaacatattattttt |
21582457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 43770330 - 43770279
Alignment:
| Q |
282 |
attttttcttctcacactagacaacacatcaaacatattatttttatcccct |
333 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
43770330 |
attttttcttcccacccatgacaacacatcaaacatattatttttgtcccct |
43770279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 16541707 - 16541645
Alignment:
| Q |
271 |
tcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
333 |
Q |
| |
|
|||||||| ||||||||||||| | | | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
16541707 |
tcaccctccttattttttcttcccgctccggacaacacatcaaacatattctttttgtcccct |
16541645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 16623955 - 16624017
Alignment:
| Q |
271 |
tcaccctctttattttttcttctcacactagacaacacatcaaacatattatttttatcccct |
333 |
Q |
| |
|
|||||||| ||||||||||||| | | | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
16623955 |
tcaccctccttattttttcttcccgctccggacaacacatcaaacatattctttttgtcccct |
16624017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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