View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17109_low_3 (Length: 345)
Name: NF17109_low_3
Description: NF17109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17109_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 43070383 - 43070709
Alignment:
| Q |
13 |
aaaggggtgaagatagactcatccatgctttaattaattcttgttcttgagtcttaaatcattaacggatcaagacaaaagacaaagagatacatgtttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43070383 |
aaaggggtgaagatagactcatccatgctttaattaattcttgttcttgagtctttaatcattaacggatgcagacaaaagacaaagagatacatgtttt |
43070482 |
T |
|
| Q |
113 |
agagacataagggcnnnnnnnnnaa-----------gacatgatcactaactcatgtgattgtgnnnnnnnnn-ctttacagcacacattaattattttc |
200 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43070483 |
agagacataagggctttttttttaaagtttttttaagacatgatcactaactcatgtgattgtgttttttttttctttacagcacacattaatttttttc |
43070582 |
T |
|
| Q |
201 |
ttctaaactaccattgcttttaaaattaagtatcaatctattactcttgttggtcaagttgagaagtctctccttctaagagatgcttctcaactgcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070583 |
ttctaaactaccattgcttttaaaattaagtatcaatctattactcttgttggtcaagttgagaagtctctccttctaagagatgcttctcaactgcaaa |
43070682 |
T |
|
| Q |
301 |
tcatgttgaaaagttacggtagttgag |
327 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
43070683 |
tcatgttgaaaagttaccatagttgag |
43070709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University