View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17109_low_4 (Length: 275)
Name: NF17109_low_4
Description: NF17109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17109_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 13007936 - 13008185
Alignment:
| Q |
10 |
attatactaaattacacaaatttagttatccgttttataagtttcgaaagatataatggataaacannnnnnnaaaggaccatggaactagtgtataatg |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13007936 |
attatattaaattacacaaatttagttatccgttttataagtttcgaaagatataatggataaacatttttttaaaggaccatggaactagtgtataatg |
13008035 |
T |
|
| Q |
110 |
gttactgtcaatcatgtgacagttaatggacatgtgaagttatggacacaaattatatctttgatgcacatttacatattaatgtatatatcttgccaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008036 |
gttactgtcaatcatgtgacagttaatggacatgtgaagttatggacacaaattatatctttgatgcacatttacatattaatgtatatatcttgccaga |
13008135 |
T |
|
| Q |
210 |
gtaagtaatcaataaatatttgtatactacaagaatgagctaggagttct |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008136 |
gtaagtaatcaataaatatttgtatactacaagaatgagctaggagttct |
13008185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 13119500 - 13119261
Alignment:
| Q |
23 |
acacaaatttagttatccgttttataagtttcgaaagatataatggataaacannnnnnnaaaggaccatggaactagtgtataatggttactgtcaatc |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13119500 |
acacaaatttagttatccgttttatatgttccgaaagatataatggataaacatttttccaaaggaccatggaactagtgtataatggttactgtcaatc |
13119401 |
T |
|
| Q |
123 |
at---gtgacagttaatggacatgtgaagttatggacacaaattatatctttgatgcacatttacatattaatgtatatatcttgccagagtaagtaatc |
219 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13119400 |
atcatgtgacagttaatggatatgtgaagttatggacacaaattatatctttgatgcacatttacatattaatgtatatatcttgccagagtaagtaatc |
13119301 |
T |
|
| Q |
220 |
aataaatatttgtatactacaagaatgagctaggagttct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13119300 |
aataaatatttgtatactacaagaatgaggtaggagttct |
13119261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University