View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17109_low_5 (Length: 248)
Name: NF17109_low_5
Description: NF17109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17109_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 51867162 - 51866922
Alignment:
| Q |
8 |
ataattctatttggaatacctggtattaacatttgactttacctagtatttgacatttgactttacaatgaactttttgagttttcttcaaggatcagat |
107 |
Q |
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| T |
51867162 |
ataattctatttggaatacctggtattaacatttgactttacctagtatttgacatttgactttacaatgaactttttgagttttcttcaaggatcagat |
51867063 |
T |
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| Q |
108 |
aagaggtagtataccctagttttacatccataattacaagaaaatctctcatctttgttgaaatgcattaatatttgctatacaagtagtgtaaatagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51867062 |
aagaggtagtataccctagttttacatccataattacaagaaaatctctcatctttgttgaaatgcataaatatttgctatacaagtagtgtaaatagtt |
51866963 |
T |
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| Q |
208 |
ggtcatttgcagtcgaaactctctcttttggtgtttatcat |
248 |
Q |
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| T |
51866962 |
ggtcatttgcagtcgaaactctctcttttggtgtttatcat |
51866922 |
T |
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