View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_high_10 (Length: 285)
Name: NF1710_high_10
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 14396626 - 14396411
Alignment:
| Q |
24 |
atagtgcagactatatttcctgataattggccggatagaaagattcgaagatttagtacacttactttatattataccatacagtattggaatgtgtgtg |
123 |
Q |
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| T |
14396626 |
atagtgcagactatatttcctgataattggccggatagaaagattcgaagatttaatacacttactttatactatac-----agtattggaatgtgtgtg |
14396532 |
T |
|
| Q |
124 |
ccgagccaagaagaaggagcccgaaacactacatgaaatactaacttctgatatcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactc |
223 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14396531 |
ccgagccgagaagaaggagcccgaaacaatacatgaaatactaacttctgatatcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactc |
14396432 |
T |
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| Q |
224 |
caaataactcgcactagcagc |
244 |
Q |
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||||||||||||||||||||| |
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| T |
14396431 |
caaataactcgcactagcagc |
14396411 |
T |
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