View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_high_11 (Length: 274)

Name: NF1710_high_11
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_high_11
NF1710_high_11
[»] chr4 (3 HSPs)
chr4 (15-257)||(18586284-18586526)
chr4 (45-93)||(17737306-17737354)
chr4 (45-93)||(31138045-31138093)
[»] chr5 (1 HSPs)
chr5 (15-99)||(31021102-31021186)
[»] chr3 (2 HSPs)
chr3 (18-93)||(54517553-54517628)
chr3 (152-213)||(29709120-29709181)
[»] chr2 (2 HSPs)
chr2 (124-189)||(16106106-16106170)
chr2 (45-93)||(12331017-12331065)
[»] chr6 (2 HSPs)
chr6 (45-93)||(20755825-20755873)
chr6 (166-253)||(25508992-25509080)
[»] chr1 (4 HSPs)
chr1 (45-93)||(4434950-4434998)
chr1 (45-93)||(25666748-25666796)
chr1 (15-90)||(2822182-2822257)
chr1 (176-213)||(50941364-50941401)
[»] chr8 (1 HSPs)
chr8 (15-70)||(23471389-23471444)
[»] scaffold1341 (1 HSPs)
scaffold1341 (15-89)||(1931-2005)
[»] chr7 (1 HSPs)
chr7 (15-89)||(26783069-26783143)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 18586526 - 18586284
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatcttcatacgaagaataagattc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  18586526 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaacttaggctttaattcatctttatacgaagaataagattc 18586427  T
Q  115 acgaacaagcccagaaattcatctgatattcatacatatgaacccataaattcatctaacattcatacatatgaacctaggaacattttgaagttcataa 214  Q
    | ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18586426 atgaacaagcccaaaaattcatctgatattaatacatatgaacccagaaattcatctaacattcatacatatgaacctaggaacattttgaagttcataa 18586327  T
Q  215 ttcatgaacatatgaacattttgaagtattctgatgaacccat 257  Q
    || |||||||| |||||||| ||||||||||| ||||||||||    
T  18586326 ttgatgaacatttgaacattctgaagtattctaatgaacccat 18586284  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 17737354 - 17737306
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  17737354 cttcttgtaacgtatcaaatacttgtccaatcttaggctttaattcatc 17737306  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 31138045 - 31138093
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  31138045 cttcttgtaacgtatcaaatacttgtccaatcttaggctttaattcatc 31138093  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 31021102 - 31021186
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatcttcata 99  Q
    ||||||||||||||| || ||| |||| | ||||| |||| |||||||||| |||||||||||| ||||| |||||||| |||||    
T  31021102 tatgtgcataattttggtaaaacagtttaccttctgctaacgtatcaaatatttgtccaaccttcggcttcaattcatcgtcata 31021186  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 54517628 - 54517553
Alignment:
Q  18 gtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    ||||||| ||||||| ||| | || | |||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  54517628 gtgcatatttttcgtaaaaaattttaccttcttgtaatgtatcaaatacttgtccaatcttaggctttaattcatc 54517553  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 29709181 - 29709120
Alignment:
Q  152 atgaacccataaattcatctaacattcatacatatgaacctaggaacattttgaagttcata 213  Q
    ||||||||| |||||||  | | ||||||||||||||||| ||||||||| |||||||||||    
T  29709181 atgaacccagaaattcacatgatattcatacatatgaaccaaggaacattctgaagttcata 29709120  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 16106170 - 16106106
Alignment:
Q  124 cccagaaattcatctgatattcatacatatgaacccataaattcatctaacattcatacatatgaa 189  Q
    |||| |||||||||||| |||||||   ||||||||||||||||||||||||||||| ||||||||    
T  16106170 cccaaaaattcatctgacattcatagg-atgaacccataaattcatctaacattcatccatatgaa 16106106  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 12331017 - 12331065
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  12331017 cttcatctaatgtatcaaatacttgtccaatcttaggctttaattcatc 12331065  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 20755825 - 20755873
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  20755825 cttcttgtaacgtatcaaatacttgtccaatcttaggctttaattcatc 20755873  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 25508992 - 25509080
Alignment:
Q  166 tcatctaacattcatacatatgaacctaggaacattttgaagttcata-attcatgaacatatgaacattttgaagtattctgatgaac 253  Q
    ||||||||||||||| ||||| |||| || |||||  |||||||||||  || |||||||||  |||||| |||||||| |||||||||    
T  25508992 tcatctaacattcattcatataaacccagaaacatcctgaagttcatatcttgatgaacataacaacattatgaagtatcctgatgaac 25509080  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 4434998 - 4434950
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  4434998 cttcatctaatgtatcaaatacttgtccaatcttaggctttaattcatc 4434950  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 25666796 - 25666748
Alignment:
Q  45 cttcttctaaagtatcaaatacttgtccaaccttaggctttaattcatc 93  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  25666796 cttcatctaatgtatcaaatacttgtccaatcttaggctttaattcatc 25666748  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 2822257 - 2822182
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaattc 90  Q
    ||||||||||||||| || || | ||| | |||||| ||| |||||||||| ||||||||||||||| || |||||    
T  2822257 tatgtgcataattttggtaaatttgtttaccttcttttaatgtatcaaatatttgtccaaccttaggtttcaattc 2822182  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 50941364 - 50941401
Alignment:
Q  176 ttcatacatatgaacctaggaacattttgaagttcata 213  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  50941364 ttcatacatatgaacccaggaacattctgaagttcata 50941401  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 23471389 - 23471444
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgt 70  Q
    ||||||||||||| | || |||||||||| |  |||||||||||||||||||||||    
T  23471389 tatgtgcataattattgtaaaatagttcaccaacttctaaagtatcaaatacttgt 23471444  T

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Target: scaffold1341 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1341
Description:

Target: scaffold1341; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 1931 - 2005
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaatt 89  Q
    ||||||||||||| | || ||| |||| | ||||| |||| |||||||||| |||||||||||| ||||| ||||    
T  1931 tatgtgcataattctggtaaaacagtttaccttctgctaacgtatcaaatatttgtccaaccttcggcttcaatt 2005  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 26783143 - 26783069
Alignment:
Q  15 tatgtgcataattttcgtgaaatagttcatcttcttctaaagtatcaaatacttgtccaaccttaggctttaatt 89  Q
    ||||||||||||| | || ||| |||| | ||||| |||| |||||||||| |||||||||||| ||||| ||||    
T  26783143 tatgtgcataattctggtaaaacagtttaccttctgctaacgtatcaaatatttgtccaaccttcggcttcaatt 26783069  T

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