View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_high_18 (Length: 243)
Name: NF1710_high_18
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 1588381 - 1588148
Alignment:
| Q |
10 |
catcatcaacaatggataacttacaatagatgttgaaggttcgttagatcgaatgatacactattcatacaaaatatatttttctcaaacatcgcctact |
109 |
Q |
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| T |
1588381 |
catcatgaacaatggataacttacgatagatgttgaaggttcgttagatcgaatgatacactattcatacaaaatatatttttctcaaacatcgcctact |
1588282 |
T |
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| Q |
110 |
cttgactnnnnnnncttcattgaattattgactcgttgttgaaccctcggtcgtgttcttcgccactttcgttaaaaatggtcttatcattcaatttctc |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1588281 |
cttgactaaaaaaacttcattgaattattgactcgttgttgaaccttcggtcgtgttcttcgccactttcgttaaaaatggtcttatcattcaatttctc |
1588182 |
T |
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| Q |
210 |
tactaaaaccccaattgttgttgtggtttcaatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1588181 |
tactaaaaccccaattgttgttgtggtttcaatt |
1588148 |
T |
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