View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_high_25 (Length: 222)

Name: NF1710_high_25
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_high_25
NF1710_high_25
[»] chr1 (5 HSPs)
chr1 (1-222)||(14766800-14767021)
chr1 (13-212)||(14873019-14873218)
chr1 (113-211)||(14877850-14877948)
chr1 (65-149)||(14872226-14872310)
chr1 (134-222)||(14786016-14786104)
[»] scaffold0042 (1 HSPs)
scaffold0042 (66-222)||(83863-84019)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14766800 - 14767021
Alignment:
Q  1 gaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14766800 gaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggtt 14766899  T
Q  101 ttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14766900 ttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtat 14766999  T
Q  201 aaccaaaccttccacgccttta 222  Q
    ||||||||||||| | ||||||    
T  14767000 aaccaaaccttcctctccttta 14767021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 14873019 - 14873218
Alignment:
Q  13 tatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaa 112  Q
    |||||||||||||||||  |||||||||||||||||| | || |||||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |    
T  14873019 tatatatagtctcacacatatcatagcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccaccca 14873118  T
Q  113 tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc 212  Q
    ||||||||||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||||||    
T  14873119 tagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttc 14873218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 14877850 - 14877948
Alignment:
Q  113 tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaacctt 211  Q
    ||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||| ||| |||||||||||||||||    
T  14877850 tagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctt 14877948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 14872226 - 14872310
Alignment:
Q  65 ttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatc 149  Q
    ||||||| ||||| |||||||||| || ||||||||| |||||| |  ||||||||||| | |||||||||||||||||| ||||    
T  14872226 ttaaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcacattatc 14872310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 14786016 - 14786104
Alignment:
Q  134 tcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttccacgccttta 222  Q
    |||||||||||||||| |  |||||||| ||| |||||||| |||||  ||| ||| ||| ||||||||||||||||||| | ||||||    
T  14786016 tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctccttta 14786104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 83863 - 84019
Alignment:
Q  66 taaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaac 165  Q
    ||||| |||||| |||||| ||||||  | || ||||  | |||| ||||||||   ||| |||||||||||||| ||  |||| ||||||||||| |||    
T  83863 taaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaac 83962  T
Q  166 ttctccatggcttgagctggtaaacaaagtggtataaccaaaccttccacgccttta 222  Q
     |||| ||| |||||| ||| ||| ||| ||||||||| ||||||||| | ||||||    
T  83963 ctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctccttta 84019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University