View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_high_7 (Length: 382)
Name: NF1710_high_7
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 32 - 366
Target Start/End: Complemental strand, 440122 - 439790
Alignment:
| Q |
32 |
gtagaagataaggaaatttgtataaaataaaagagagtaggagctagaaccagctagattttcttaaataatgaaatgtctatgatgttttcaggagtct |
131 |
Q |
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| T |
440122 |
gtagaagataaggaaatttgtataaaataaaagagagtaggagctagaaccagctagattttcttaaataatgaaatgtctatgatgttttcaggagtct |
440023 |
T |
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| Q |
132 |
tatgcatgtgctttatccttctattatttttgtaagacttaaaaatatacgtagannnnnnnnaggtaaaatatatatgtatgtatagttgtcaactaat |
231 |
Q |
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| T |
440022 |
tatgcatgtgctttatccttctattatttttgtaagacttaaaaatatacgtagattttttttaggtaaaatatatatgtatgtatagttgtcaactaat |
439923 |
T |
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| Q |
232 |
catatagccataatttcactatttaattcctctgtctcatacatgcggcgtttgatggagattttattctatcaatcaatatatctaattagcattccat |
331 |
Q |
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| T |
439922 |
catatagccataatttcactatttaattc--ctgtctcatacatgcggcgtttgatggagattttattctatcaatcaaaatatctaattggcattccat |
439825 |
T |
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| Q |
332 |
caaatgaacaacaataaccatcttctactcttctc |
366 |
Q |
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| T |
439824 |
caaatgaacaacaacaaccatcttctactcttctc |
439790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 8779127 - 8779060
Alignment:
| Q |
244 |
atttcactatttaattcctctgtctcatacatgcggcgtttgatggagattttattctatcaatcaatatatctaat |
320 |
Q |
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| T |
8779127 |
atttcattatttaattcctctgtttcatacatgcggc---------agattttattgtatcaatcaatatatctaat |
8779060 |
T |
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