View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_high_9 (Length: 307)

Name: NF1710_high_9
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_high_9
NF1710_high_9
[»] chr7 (11 HSPs)
chr7 (5-307)||(18997792-18998094)
chr7 (5-307)||(18953099-18953401)
chr7 (5-307)||(18983146-18983448)
chr7 (5-129)||(18988126-18988250)
chr7 (79-147)||(19637571-19637639)
chr7 (92-130)||(661023-661061)
chr7 (195-239)||(19357677-19357721)
chr7 (173-240)||(19604733-19604800)
chr7 (81-138)||(29880927-29880984)
chr7 (105-137)||(22039898-22039930)
chr7 (85-137)||(24391074-24391126)
[»] chr4 (5 HSPs)
chr4 (81-134)||(3565397-3565450)
chr4 (82-140)||(3557380-3557438)
chr4 (86-134)||(1686649-1686697)
chr4 (107-145)||(35766701-35766739)
chr4 (81-138)||(3561318-3561375)
[»] scaffold0097 (1 HSPs)
scaffold0097 (82-138)||(16711-16767)
[»] chr2 (2 HSPs)
chr2 (82-138)||(20712872-20712928)
chr2 (79-140)||(20975215-20975276)
[»] scaffold0464 (1 HSPs)
scaffold0464 (201-239)||(7837-7875)
[»] chr3 (2 HSPs)
chr3 (201-239)||(12735055-12735093)
chr3 (199-239)||(32579121-32579161)
[»] chr1 (1 HSPs)
chr1 (85-134)||(39379425-39379474)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 18998094 - 18997792
Alignment:
Q  5 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18998094 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 18997995  T
Q  105 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatgctggcgtgtat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997994 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatgctggcgtgtat 18997895  T
Q  205 gtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttg 304  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997894 gtgagtggcactgttaattggttggccattcgaaacgcgtgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttg 18997795  T
Q  305 att 307  Q
    |||    
T  18997794 att 18997792  T

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Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 18953401 - 18953099
Alignment:
Q  5 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  18953401 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgttctatgaaaagatcaacgaggtgagagttttcaattttgg 18953302  T
Q  105 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatgctggcgtgtat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18953301 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccacttgtccccatactcatctgggtattaatgctggcgtgtat 18953202  T
Q  205 gtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18953201 gtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttg 18953102  T
Q  305 att 307  Q
    |||    
T  18953101 att 18953099  T

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Target: chr7; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 18983448 - 18983146
Alignment:
Q  5 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983448 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 18983349  T
Q  105 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatgctggcgtgtat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18983348 cgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccacttgtccccatactcatctgggtattaatgctggcgtgtat 18983249  T
Q  205 gtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttg 304  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18983248 gtgagtggcactgttaactggttggccattcgaaacgcgtgtccatgtaattttgaattgaaatctattactattgaccaattcgtgatcatctcccttg 18983149  T
Q  305 att 307  Q
    |||    
T  18983148 att 18983146  T

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Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 18988250 - 18988126
Alignment:
Q  5 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18988250 cactttggcggttttggtttggttatgatgattcaattaacgattataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttagg 18988151  T
Q  105 cgataatgtttggagacatattcaa 129  Q
    |||||||||||||||||||||||||    
T  18988150 cgataatgtttggagacatattcaa 18988126  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 19637639 - 19637571
Alignment:
Q  79 aacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcctgtggctcct 147  Q
    ||||||||||||||||| | ||| || ||||| ||||||||| ||||||||||||||||| ||| ||||    
T  19637639 aacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 19637571  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 661061 - 661023
Alignment:
Q  92 ttttcaatttaggcgataatgtttggagacatattcaaa 130  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  661061 ttttcaatttaggcgataatgtttggagaaatattcaaa 661023  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 19357677 - 19357721
Alignment:
Q  195 tggcgtgtatgtgagtggcactgttaactggttggccattcgaaa 239  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||    
T  19357677 tggcgtgtatgtgagaggcactattaactggttggctattcgaaa 19357721  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 19604800 - 19604733
Alignment:
Q  173 atactcatctgggtattaatgctggcgtgtatgtgagtggcactgttaactggttggccattcgaaac 240  Q
    |||||||| ||| |||||||  ||| |||||||||||||| ||| |||||||||||| ||||| ||||    
T  19604800 atactcatatggctattaataatggtgtgtatgtgagtggtactcttaactggttggtcattcaaaac 19604733  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 29880927 - 29880984
Alignment:
Q  81 cgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 138  Q
    ||||||||||||| ||||| | || ||| ||||||||||| ||||| |||||||||||    
T  29880927 cgaggtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 22039898 - 22039930
Alignment:
Q  105 cgataatgtttggagacatattcaaagttttcc 137  Q
    |||||||||||||||| ||||||||||||||||    
T  22039898 cgataatgtttggagaaatattcaaagttttcc 22039930  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24391074 - 24391126
Alignment:
Q  85 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 137  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  24391074 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 3565397 - 3565450
Alignment:
Q  81 cgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttt 134  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  3565397 cgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 3557380 - 3557438
Alignment:
Q  82 gaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcctgt 140  Q
    ||||| |||||||||| |||||| ||||||||||||||| ||||| ||||||| |||||    
T  3557380 gaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccctgt 3557438  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  86 tgagagttttcaatttaggcgataatgtttggagacatattcaaagttt 134  Q
    |||||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 35766701 - 35766739
Alignment:
Q  107 ataatgtttggagacatattcaaagttttcctgtggctc 145  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  35766701 ataatgtttggagacgcattcaaagttttcctgtggctc 35766739  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 3561375 - 3561318
Alignment:
Q  81 cgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 138  Q
    ||||||||||| ||||  ||| || ||||||||||||||| ||||| |||||||||||    
T  3561375 cgaggtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcct 3561318  T

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Target: scaffold0097 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 16767 - 16711
Alignment:
Q  82 gaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 138  Q
    ||||| |||||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  16767 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 16711  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 20712928 - 20712872
Alignment:
Q  82 gaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 138  Q
    ||||| |||||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  20712928 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 20712872  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 20975215 - 20975276
Alignment:
Q  79 aacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcctgt 140  Q
    |||||||| | |||||||| ||| ||||| ||| |||||||| |||||||||||||||||||    
T  20975215 aacgaggtaaaagttttcactttgggcgaaaatatttggagaaatattcaaagttttcctgt 20975276  T

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Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 7837 - 7875
Alignment:
Q  201 gtatgtgagtggcactgttaactggttggccattcgaaa 239  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7837 gtatgtgagtggcactgttaactggttggctattcgaaa 7875  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 12735093 - 12735055
Alignment:
Q  201 gtatgtgagtggcactgttaactggttggccattcgaaa 239  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  12735093 gtatgtaagtggcactgttaactggttggctattcgaaa 12735055  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 32579161 - 32579121
Alignment:
Q  199 gtgtatgtgagtggcactgttaactggttggccattcgaaa 239  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  32579161 gtgtatgtgagtggcactattaattggttggctattcgaaa 32579121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 39379474 - 39379425
Alignment:
Q  85 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttt 134  Q
    ||||||||||||| ||| || ||||||||||||||| ||||| |||||||    
T  39379474 gtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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