View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_low_11 (Length: 329)

Name: NF1710_low_11
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_low_11
NF1710_low_11
[»] chr8 (25 HSPs)
chr8 (126-311)||(20853025-20853211)
chr8 (120-201)||(12045542-12045623)
chr8 (120-201)||(42443207-42443288)
chr8 (120-203)||(1796584-1796667)
chr8 (121-203)||(32725669-32725751)
chr8 (121-198)||(5782890-5782967)
chr8 (120-201)||(6005045-6005126)
chr8 (120-204)||(30578355-30578440)
chr8 (120-203)||(14233530-14233614)
chr8 (120-201)||(36740413-36740494)
chr8 (120-195)||(37524323-37524398)
chr8 (121-201)||(44380503-44380583)
chr8 (120-195)||(44672128-44672203)
chr8 (121-192)||(295648-295719)
chr8 (121-202)||(3206350-3206432)
chr8 (121-206)||(33511703-33511789)
chr8 (121-162)||(7602959-7603000)
chr8 (120-197)||(7678833-7678910)
chr8 (125-170)||(31665910-31665955)
chr8 (121-197)||(42651022-42651099)
chr8 (121-178)||(45405747-45405804)
chr8 (120-148)||(5742599-5742627)
chr8 (120-148)||(8233438-8233466)
chr8 (120-200)||(9046254-9046334)
chr8 (120-195)||(42689886-42689959)
[»] chr7 (24 HSPs)
chr7 (120-201)||(35098476-35098557)
chr7 (125-201)||(35072134-35072210)
chr7 (120-203)||(18157072-18157155)
chr7 (120-201)||(27688738-27688819)
chr7 (121-201)||(25940556-25940636)
chr7 (120-201)||(6655506-6655587)
chr7 (120-170)||(29034186-29034236)
chr7 (120-195)||(37351885-37351960)
chr7 (120-199)||(43107713-43107792)
chr7 (120-201)||(2469793-2469874)
chr7 (120-201)||(9031308-9031389)
chr7 (121-209)||(47644811-47644899)
chr7 (138-200)||(22692199-22692261)
chr7 (120-201)||(30941278-30941359)
chr7 (121-197)||(32315928-32316005)
chr7 (120-152)||(21588865-21588897)
chr7 (121-152)||(40693466-40693497)
chr7 (120-178)||(2600446-2600504)
chr7 (121-195)||(12141986-12142060)
chr7 (120-201)||(43079518-43079602)
chr7 (120-162)||(44175646-44175688)
chr7 (120-162)||(48057425-48057467)
chr7 (121-178)||(640494-640551)
chr7 (120-201)||(8061635-8061715)
[»] chr1 (37 HSPs)
chr1 (120-203)||(4604630-4604713)
chr1 (120-201)||(40595943-40596024)
chr1 (120-200)||(51339590-51339670)
chr1 (120-201)||(36930645-36930726)
chr1 (122-201)||(44730747-44730826)
chr1 (120-201)||(42299076-42299158)
chr1 (120-201)||(18648866-18648947)
chr1 (120-201)||(48872480-48872561)
chr1 (120-201)||(49621462-49621543)
chr1 (120-201)||(25239125-25239207)
chr1 (120-202)||(43611970-43612052)
chr1 (120-201)||(25061834-25061915)
chr1 (120-201)||(27352731-27352812)
chr1 (120-193)||(30530471-30530544)
chr1 (120-201)||(50527946-50528027)
chr1 (120-201)||(8577390-8577472)
chr1 (126-203)||(11121587-11121665)
chr1 (120-201)||(21255673-21255755)
chr1 (120-198)||(32821736-32821814)
chr1 (120-201)||(30687153-30687234)
chr1 (122-203)||(45349984-45350065)
chr1 (120-201)||(51172196-51172277)
chr1 (120-201)||(16658540-16658625)
chr1 (120-198)||(25098683-25098758)
chr1 (126-201)||(40605309-40605385)
chr1 (120-201)||(31244623-31244705)
chr1 (120-201)||(47059778-47059860)
chr1 (120-152)||(48325323-48325355)
chr1 (120-162)||(9011746-9011788)
chr1 (120-197)||(37947112-37947190)
chr1 (121-202)||(38627331-38627413)
chr1 (120-166)||(41885822-41885868)
chr1 (121-178)||(2827622-2827679)
chr1 (120-197)||(11460895-11460972)
chr1 (121-178)||(46903572-46903629)
chr1 (120-152)||(16987548-16987580)
chr1 (120-203)||(51168654-51168738)
[»] chr3 (27 HSPs)
chr3 (120-202)||(43409253-43409335)
chr3 (120-197)||(29800442-29800519)
chr3 (120-203)||(1031314-1031397)
chr3 (120-198)||(41717364-41717442)
chr3 (120-201)||(31326809-31326890)
chr3 (120-201)||(1901815-1901896)
chr3 (120-201)||(1911261-1911342)
chr3 (120-201)||(25959431-25959512)
chr3 (120-201)||(32795937-32796018)
chr3 (120-201)||(44593067-44593148)
chr3 (120-201)||(7867598-7867679)
chr3 (120-201)||(32981010-32981091)
chr3 (120-201)||(50294013-50294094)
chr3 (121-201)||(1295434-1295514)
chr3 (120-201)||(34607808-34607889)
chr3 (120-200)||(462291-462371)
chr3 (120-200)||(981571-981651)
chr3 (120-208)||(29706004-29706092)
chr3 (120-195)||(7231901-7231976)
chr3 (120-202)||(47276386-47276469)
chr3 (120-197)||(46473229-46473306)
chr3 (120-162)||(30400084-30400126)
chr3 (120-193)||(11173551-11173624)
chr3 (121-178)||(50025597-50025654)
chr3 (120-148)||(2280278-2280306)
chr3 (120-203)||(33971984-33972068)
chr3 (126-197)||(53715422-53715494)
[»] scaffold0184 (1 HSPs)
scaffold0184 (120-203)||(16481-16564)
[»] scaffold0078 (1 HSPs)
scaffold0078 (120-203)||(56280-56363)
[»] chr5 (38 HSPs)
chr5 (120-202)||(9636046-9636128)
chr5 (122-202)||(582757-582837)
chr5 (120-203)||(7080615-7080696)
chr5 (120-201)||(15639486-15639567)
chr5 (126-201)||(24792559-24792634)
chr5 (120-201)||(91316-91397)
chr5 (120-201)||(6865676-6865757)
chr5 (122-202)||(7144678-7144758)
chr5 (125-201)||(38387817-38387892)
chr5 (120-203)||(36624419-36624502)
chr5 (121-203)||(19437359-19437441)
chr5 (120-202)||(26627431-26627513)
chr5 (120-201)||(5698217-5698298)
chr5 (120-201)||(36581356-36581437)
chr5 (120-201)||(28904093-28904178)
chr5 (120-201)||(28940488-28940573)
chr5 (120-202)||(11880874-11880957)
chr5 (120-202)||(13734248-13734330)
chr5 (120-202)||(39595375-39595457)
chr5 (120-195)||(33567134-33567209)
chr5 (120-195)||(34381113-34381188)
chr5 (120-162)||(2051027-2051069)
chr5 (120-178)||(3518284-3518342)
chr5 (120-162)||(9596742-9596784)
chr5 (120-162)||(12512894-12512936)
chr5 (120-197)||(12612909-12612987)
chr5 (120-162)||(17489449-17489491)
chr5 (120-154)||(20040887-20040921)
chr5 (120-201)||(32732005-32732089)
chr5 (120-197)||(43152952-43153030)
chr5 (121-197)||(8442261-8442338)
chr5 (121-162)||(19563515-19563556)
chr5 (121-162)||(25345440-25345481)
chr5 (120-201)||(26626708-26626789)
chr5 (120-197)||(33243634-33243711)
chr5 (120-148)||(10469889-10469917)
chr5 (122-150)||(20125493-20125521)
chr5 (120-192)||(40201018-40201090)
[»] chr4 (30 HSPs)
chr4 (120-202)||(28676042-28676124)
chr4 (120-201)||(46567030-46567111)
chr4 (120-197)||(12638925-12639002)
chr4 (120-201)||(18874812-18874894)
chr4 (120-202)||(23836988-23837070)
chr4 (120-209)||(5234352-5234441)
chr4 (120-197)||(30778157-30778234)
chr4 (121-202)||(33438147-33438228)
chr4 (120-201)||(37977216-37977297)
chr4 (125-197)||(16508870-16508942)
chr4 (120-195)||(31275247-31275322)
chr4 (120-202)||(40847470-40847550)
chr4 (120-201)||(43982998-43983080)
chr4 (120-201)||(54801097-54801179)
chr4 (120-201)||(55510960-55511041)
chr4 (120-152)||(34027997-34028029)
chr4 (123-203)||(7795102-7795184)
chr4 (121-195)||(31318850-31318925)
chr4 (120-162)||(2193737-2193779)
chr4 (120-154)||(3223090-3223124)
chr4 (120-178)||(9827897-9827955)
chr4 (121-179)||(22071600-22071658)
chr4 (120-162)||(31221514-31221556)
chr4 (124-197)||(34259931-34260005)
chr4 (121-195)||(42915114-42915188)
chr4 (121-162)||(4514193-4514234)
chr4 (121-197)||(6686148-6686225)
chr4 (121-197)||(33574966-33575043)
chr4 (120-172)||(25936341-25936393)
chr4 (175-203)||(38889033-38889061)
[»] scaffold0003 (1 HSPs)
scaffold0003 (120-201)||(337219-337300)
[»] chr6 (15 HSPs)
chr6 (121-201)||(32729991-32730071)
chr6 (120-202)||(8173200-8173282)
chr6 (120-201)||(16533148-16533230)
chr6 (120-201)||(21443789-21443870)
chr6 (120-201)||(25561831-25561910)
chr6 (120-201)||(26101345-26101424)
chr6 (120-203)||(25567380-25567460)
chr6 (120-195)||(32253881-32253957)
chr6 (120-201)||(608549-608631)
chr6 (121-152)||(11742922-11742953)
chr6 (120-154)||(3089058-3089092)
chr6 (120-201)||(12044431-12044513)
chr6 (121-151)||(16743205-16743235)
chr6 (120-158)||(17902624-17902662)
chr6 (120-197)||(22422251-22422329)
[»] chr2 (24 HSPs)
chr2 (120-199)||(5167633-5167712)
chr2 (122-194)||(10288255-10288327)
chr2 (121-203)||(32128232-32128313)
chr2 (120-203)||(305855-305939)
chr2 (120-200)||(11126565-11126644)
chr2 (121-201)||(21805675-21805755)
chr2 (120-195)||(3091842-3091917)
chr2 (120-199)||(19668078-19668157)
chr2 (120-198)||(30856908-30856986)
chr2 (120-201)||(40951291-40951372)
chr2 (120-192)||(13553244-13553316)
chr2 (120-203)||(4842406-4842489)
chr2 (120-195)||(14140234-14140309)
chr2 (120-202)||(37631254-37631337)
chr2 (120-153)||(23358516-23358549)
chr2 (121-178)||(34373110-34373167)
chr2 (122-201)||(36763408-36763488)
chr2 (120-202)||(694370-694453)
chr2 (120-195)||(11164271-11164346)
chr2 (120-195)||(13711162-13711237)
chr2 (120-200)||(3959997-3960078)
chr2 (121-178)||(4858215-4858272)
chr2 (156-201)||(19637364-19637409)
chr2 (156-201)||(19835957-19836002)
[»] scaffold0166 (1 HSPs)
scaffold0166 (126-201)||(34942-35017)
[»] scaffold0002 (1 HSPs)
scaffold0002 (120-201)||(440819-440900)
[»] scaffold0115 (1 HSPs)
scaffold0115 (120-195)||(15084-15158)
[»] scaffold0651 (1 HSPs)
scaffold0651 (121-195)||(4745-4820)
[»] scaffold0036 (1 HSPs)
scaffold0036 (120-195)||(18105-18179)
[»] scaffold0016 (1 HSPs)
scaffold0016 (121-202)||(204334-204416)
[»] scaffold0687 (1 HSPs)
scaffold0687 (121-162)||(641-682)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 126 - 311
Target Start/End: Original strand, 20853025 - 20853211
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtcaaaaa--ggttataccaaataattgttcaaatatcattgctcatgttttagtctccattacaga 223  Q
    |||| |||||| |||| |||||||||||| |||||||||||  | || |||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  20853025 ttttaaccaataagaa-agagaaaaagaagattgtcaaaaaaagattgtaccaaatgattgttcaaatatcatttctcatattttagtctccattacaga 20853123  T
Q  224 aaaaatgacagtaacaagccaaaatgtggcagcctcccccgacagcaccctctctttctctgcactggtcattgcatatgctagagcc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20853124 aaaaatgacagtaacaagccaaaatgtggcagcctcccccgacagcaccctctctttctctgcattggtcattgcatatgctagagcc 20853211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 12045623 - 12045542
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||  ||||||||||||||||||||    
T  12045623 cattgtttttgaccaatgagaagagacaagaagaaggttgtcaaaaaggttataccaaatggttgttcaaatatcattgctc 12045542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 42443207 - 42443288
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||| ||||| |||||  ||||||||||  || ||||||||| ||||||||||||||||||||    
T  42443207 cattgtttttgaccaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatagttgttcaaatatcattgctc 42443288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 1796584 - 1796667
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| || |||||  ||||||||||||||||||||||    
T  1796584 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaacaaatggttgttcaaatatcattgctcat 1796667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 32725751 - 32725669
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    |||||||||||||||||| ||||||||||| |||  |||||||| || |||||| ||||| ||||| ||||||||||||||||    
T  32725751 attgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaatagattatactaaatagttgtttaaatatcattgctcat 32725669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 5782890 - 5782967
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattg 198  Q
    ||||||||||| |||||| ||||||||||| |||  |||||||| ||||| ||||||||  |||||||||||||||||    
T  5782890 attgtttttgatcaatgaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattg 5782967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 6005045 - 6005126
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| | ||| ||||||||  ||||||||| ||||||||||    
T  6005045 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaataagttgtaccaaatggttgttcaaacatcattgctc 6005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 30578355 - 30578440
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctcatg 204  Q
    ||||||||||||||||||| ||||||||||||| |  ||||||  || ||| | | ||||||||||||||||||||||||||||||    
T  30578355 cattgtttttgaccaatgataagagagaaaaaggaggttgtcatcaaagttgtcagcaaataattgttcaaatatcattgctcatg 30578440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 14233614 - 14233530
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctcat 203  Q
    |||||||||| |||||||||||||||||| || ||  |||||| ||| |||||||| ||||||||||||| |||||||| |||||    
T  14233614 cattgttttttaccaatgagaagagagaacaacaaagttgtcacaaaagttataccaaaataattgttcagatatcattactcat 14233530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 36740413 - 36740494
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||| |||||| ||||||||||| |||  |||||||| || || || |||||  ||||||||||||||||||||    
T  36740413 cattgtttttgatcaatgaaaagagagaaaatgaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 36740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 37524398 - 37524323
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| |||||||||  ||||||  |||||||||||||    
T  37524398 cattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaggttatttcaaatagatgttcaaatatca 37524323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 44380583 - 44380503
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||| | || ||||||||  ||  |||||||||||||| ||| ||||| ||||| |||||||| |||||    
T  44380583 attgtttttgaccaatcaaaaaagagaaaagaaaggttgtcaaaaaggttgtactaaatagttgtttaaatatcagtgctc 44380503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 44672203 - 44672128
Alignment:
Q  120 cattgtttttgaccaatgagaagagaga-aaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| |||||||| ||||||||  ||||| ||| ||| || |||||||||||||||||||||    
T  44672203 cattgtttttaaccaatgaaaagagagaaaaaagaat-gtgtcacaaaagttgtatcaaataattgttcaaatatca 44672128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 295648 - 295719
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaata 192  Q
    |||||||||||||||||| || |||||||||  | ||||||| ||| |||||  |||||| |||||||||||    
T  295648 attgtttttgaccaatgaaaatagagaaaaaataaattgtcacaaaagttatctcaaatagttgttcaaata 295719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 3206432 - 3206350
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctca 202  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||  |||| | |||||  |||||||||||||||| ||||    
T  3206432 attgtttttgaccaattaaaagagagaaaaagtatgttgtcacaaaaattatcatcaaatggttgttcaaatatcattactca 3206350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 33511703 - 33511789
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgt-caaaaaggttataccaaataattgttcaaatatcattgctcatgtt 206  Q
    |||||||||||||||| ||||||||||| |||||| |||| | ||||| ||  || ||||| |||| ||||||||||| ||| ||||    
T  33511703 attgtttttgaccaataagaagagagaagaagaatgttgtcccaaaagttttcacaaaatagttgtacaaatatcattactcttgtt 33511789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 7603000 - 7602959
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    |||||||||||||||| |||||||| |||||||| |||||||    
T  7603000 attgtttttgaccaataagaagagaaaaaaagaagattgtca 7602959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 7678833 - 7678910
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||||||||| |||||||| ||||||||||||  |  |||| | ||| ||| || |||||| ||||||||||||||||    
T  7678833 cattgtttttaaccaatgaaaagagagaaaaaagaagttgttacaaaagttgtatcaaatagttgttcaaatatcatt 7678910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 31665955 - 31665910
Alignment:
Q  125 tttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggtt 170  Q
    |||||||||||||| ||||||||||||||| ||| | |||||||||    
T  31665955 tttttgaccaatgaaaagagagaaaaagaagattataaaaaaggtt 31665910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 42651022 - 42651099
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    ||||||||| |||||||||||||||||| || ||  |||||  ||| ||| |||| ||||| ||||||||||||||||    
T  42651022 attgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaagttgtaccaaaatagttgttcaaatatcatt 42651099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 45405804 - 45405747
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||||| || ||  |||||  ||||||| |||||||    
T  45405804 attgtttttgaccaatgagaagagagaacaataaagttgtctcaaaggttgtaccaaa 45405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 5742627 - 5742599
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaa 148  Q
    |||||||||||||||||||||||||||||    
T  5742627 cattgtttttgaccaatgagaagagagaa 5742599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 8233466 - 8233438
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaa 148  Q
    |||||||||||||||||||||||||||||    
T  8233466 cattgtttttgaccaatgagaagagagaa 8233438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 9046254 - 9046334
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    |||||||| |||||||| ||||| |||||||||||  |||| |  || ||| | ||||||| |||||| ||||||||||||    
T  9046254 cattgtttctgaccaataagaagggagaaaaagaaggttgttatgaaagttgttccaaatagttgttccaatatcattgct 9046334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 42689886 - 42689959
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| ||||||||||||  | ||||||| ||| ||  || |||||| ||||||||||||||    
T  42689886 cattgtttttaaccaatgaaaagagagaaaaaagaaattgtcacaaaagt--taacaaatagttgttcaaatatca 42689959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 35098557 - 35098476
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||| |||||||||||    
T  35098557 cattgttttttaccaatgagaagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaattatcattgctc 35098476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 35072210 - 35072134
Alignment:
Q  125 tttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  35072210 ttttttaccaatgagaagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaaatatcattgctc 35072134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 18157155 - 18157072
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  18157155 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgctcat 18157072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 27688738 - 27688819
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| || || |||||||||||||| |||||||||||||||    
T  27688738 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaatagattgtaccaaataattgtacaaatatcattgctc 27688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 25940636 - 25940556
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||| ||||||||||| |||  |||||||| || || ||||||||| ||||||||||||||||||||    
T  25940636 attgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctc 25940556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 6655587 - 6655506
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| |||||| |||||||| |||||||||||| || ||||||||  ||||| ||||||||||||||    
T  6655587 cattgtttttaaccaatgaaaagagataaaaagaagattgtcaaaaagattgtaccaaatggttgtttaaatatcattgctc 6655506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 29034186 - 29034236
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggtt 170  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  29034186 cattgtttttgaccaatgaaaagagagaaaaagaagattgtcaaaaaggtt 29034236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 37351960 - 37351885
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||| | ||||||||||||  | ||||||| ||| |||||| ||||| |||||||||||||||    
T  37351960 cattgtttttgaccaataaaaagagagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatca 37351885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 43107713 - 43107792
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgc 199  Q
    ||||||||||||||||||| |||| |||||| |||  |||| ||| ||||| ||||||||  ||||||||||||||||||    
T  43107713 cattgtttttgaccaatgaaaagaaagaaaaggaaggttgttaaataggttgtaccaaatggttgttcaaatatcattgc 43107792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 2469793 - 2469874
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| ||||| |||||||| || |||||||| |||  |||||||| ||||| ||||||||  ||||||||||||||||||||    
T  2469793 cattattttttaccaatgaaaatagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 2469874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 9031308 - 9031389
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| | ||||||||||| |||  |||||||| || || ||||||||  ||||||||||||||||||||    
T  9031308 cattatttttgaccaataaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 9031389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 47644811 - 47644899
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcatgtttta 209  Q
    |||||||| ||||||||||||||||| ||| |||  ||||||  || |||||||||||||||||| || |||||| | ||||| |||||    
T  47644811 attgttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttataccaaataattgtacatatatcactactcatttttta 47644899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 22692199 - 22692261
Alignment:
Q  138 agaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    |||||||||||||  || |||||||||||| |||||| ||||| |||||||||||| ||||||    
T  22692199 agaagagagaaaagaaagattgtcaaaaagattatactaaatagttgttcaaatatgattgct 22692261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 30941278 - 30941359
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| || |||||||| |||  |||||||| ||||| ||| ||||  |||||||||||| |||||||    
T  30941278 cattgtttttaaccaatgaaaaaagagaaaaggaaggttgtcaaataggttgtactaaatggttgttcaaatatgattgctc 30941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 32315928 - 32316005
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcatt 197  Q
    |||||||||||||||| |||||||||||||| ||| |||||| ||| ||| |   |||||| ||||||||||||||||    
T  32315928 attgtttttgaccaataagaagagagaaaaacaatgttgtcacaaaagttgtcgtcaaatagttgttcaaatatcatt 32316005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 21588897 - 21588865
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaag 152  Q
    |||||||||||||||||||||||||||||||||    
T  21588897 cattgtttttgaccaatgagaagagagaaaaag 21588865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 40693497 - 40693466
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaag 152  Q
    ||||||||||||||||||||||||||||||||    
T  40693497 attgtttttgaccaatgagaagagagaaaaag 40693466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 2600504 - 2600446
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||||||| |||||||    
T  2600504 cattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaa 2600446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 12141986 - 12142060
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||||||||||| |||| ||||||| ||  |||||| ||| ||| || |||||  ||||||||||||||    
T  12141986 attgtttttgaccaatgaaaagaaagaaaaaaaaagttgtcacaaaagttgtatcaaatggttgttcaaatatca 12142060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 43079602 - 43079518
Alignment:
Q  120 cattgtttttgaccaatgag---aagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||||    |||||||||||  ||  |||||||| | ||| ||||||||  ||||||||||||||||||||    
T  43079602 cattgtttttgaccaatgatgaaaagagagaaaagaaaggttgtcaaataagttttaccaaatggttgttcaaatatcattgctc 43079518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 44175646 - 44175688
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||| |||||||||| |||||||    
T  44175646 cattgtttttgaccaataagaagaaagaaaaagaagattgtca 44175688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 48057467 - 48057425
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  48057467 cattgtttttgaccaataagaagagagaaaaacaaaattgtca 48057425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 640494 - 640551
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||||| || ||  |||||  |||| ||||||||||    
T  640494 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaagattataccaaa 640551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 8061715 - 8061635
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| ||||||||  ||||||| ||| |||  || ||| ||||||||  |||||||||||| |||||||    
T  8061715 cattgtttttgaccaataagaagaga-taaaagaagattatcatgaaagttgtaccaaatggttgttcaaatattattgctc 8061635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 4604630 - 4604713
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| |||||||||||||||  |||||||| ||||| ||||||||  ||||||||||||||||||||||    
T  4604630 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaacaggttgtaccaaatcgttgttcaaatatcattgctcat 4604713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 40596024 - 40595943
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||| || |||||  ||||||||||||||||||||    
T  40596024 cattgtttttgaccaatgaaaagagagaaaaaaattattgtcaaaaaggttgtatcaaatggttgttcaaatatcattgctc 40595943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 51339670 - 51339590
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||| |||||||||||||||||||    
T  51339670 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgct 51339590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 36930726 - 36930645
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | |||||||||||||||  |||||||||||||| ||| ||||  ||||||||||||||||||||    
T  36930726 cattgtttttgaccaataaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgttcaaatatcattgctc 36930645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 44730747 - 44730826
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||| |||||||| || ||||||||||||  |||||||||||||| ||||||||  ||||||||||||||||||||    
T  44730747 ttgtttttaaccaatgaaaaaagagaaaaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctc 44730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 42299158 - 42299076
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| | ||||||||||||||| ||||||| |||| ||| ||| ||||||||||||||||||||||||||    
T  42299158 cattatttttgaccaataaaaagagagaaaaagaagattgtcaaaaaatgttgtactaaataattgttcaaatatcattgctc 42299076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 18648866 - 18648947
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| | |||| |||||||||||||| |||||| ||| |||| || |||||||||||||||||||||| |||||||    
T  18648866 cattgttttttatcaataagaagagagaaaaaaaatattctcataaagattgtaccaaataattgttcaaatatgattgctc 18648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 48872480 - 48872561
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| || |||||  ||||||||||||||||||||    
T  48872480 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 48872561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 49621462 - 49621543
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | ||||||||||| ||| ||||||||| || || ||||||||  ||||||||||||||||||||    
T  49621462 cattgtttttgaccaataaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 49621543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 25239207 - 25239125
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaata-ttgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| |||||||||||||| || | || ||| ||||||| |||| |||| ||||||||||||||||||||    
T  25239207 cattgtttttgaccaataagaagagagaaaaaaaaaagttatcataaaggttgtacccaatagttgttcaaatatcattgctc 25239125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 43612052 - 43611970
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| ||||||||| | ||| ||| ||||| ||||| ||||||||  ||| |||||||||||||||||    
T  43612052 cattgtttttgaccaatgaaaagagagaagaggaagattatcaaataggttgtaccaaatggttggtcaaatatcattgctca 43611970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 25061834 - 25061915
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| |||||||||||||||  |||||||| || || || |||||  ||||||||||||||||||||    
T  25061834 cattgtttttaaccaatgaaaagagagaaaaagaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 25061915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 27352731 - 27352812
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||  ||  ||||| || ||||| ||||||||  ||||||||||||||||||||    
T  27352731 cattgtttttgaccaatgaaaagagagaaaagaaaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctc 27352812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 30530544 - 30530471
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatat 193  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  ||||||||||||    
T  30530544 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaataggttgtaccaaatggttgttcaaatat 30530471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 50528027 - 50527946
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||||||  |||||||| || || || |||||  |||||||||||| |||||||    
T  50528027 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaatagattgtagcaaatggttgttcaaatatgattgctc 50527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 8577472 - 8577390
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||||||| |||||| || ||  |||||  ||| |||||||| ||||| ||||||||||||||||||||    
T  8577472 cattgtttttgaccaatgagaatagagaacaacaaggttgtcccaaaagttataccaaaatagttgttcaaatatcattgctc 8577390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 11121587 - 11121665
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctcat 203  Q
    |||| ||||||||||||||| || || || ||||||| ||| |||||||| ||||| ||||||||||||||||||||||    
T  11121587 ttttaaccaatgagaagagacaacaacaagattgtcacaaaagttataccaaaatagttgttcaaatatcattgctcat 11121665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 21255755 - 21255673
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||||||||||||| |  |||||| ||||| |  || |||||  ||||||||||||||||||||    
T  21255755 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 21255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 32821736 - 32821814
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattg 198  Q
    |||||||||| |||||||| ||||||||||| |||| |||||||| | ||| || |||||  |||||||||||||||||    
T  32821736 cattgttttttaccaatgaaaagagagaaaatgaatgttgtcaaataagttttatcaaatggttgttcaaatatcattg 32821814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 30687153 - 30687234
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| | |||||||||| ||||| |||||  ||||||||||  || ||||||||  ||||||||||||||||||||    
T  30687153 cattgtttttaaacaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 30687234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 45350065 - 45349984
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||| ||||||||| |||||||| ||| || |||||||||||| || |||||||| |||||| |||| |||||| ||||    
T  45350065 ttgttttcgaccaatgaaaagagagagaaaaaagattgtcaaaaagattgtaccaaatgattgttaaaatgtcattgttcat 45349984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 51172277 - 51172196
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| |  | ||||||||  || ||||||||| || || |||||||| |||||||||||||||||||||    
T  51172277 cattgtttttgaccaataaacaaagagaaaagaaagattgtcaaatagattgtaccaaatgattgttcaaatatcattgctc 51172196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 16658540 - 16658625
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataa----ttgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || |||||||| |||  |||||||| ||||| ||||||||||    ||||||||||||||||||||    
T  16658540 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 16658625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 25098758 - 25098683
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattg 198  Q
    ||||||||||||||||||| ||||||||||| |||  |||||   |||||| ||||||||  |||||||||||||||||    
T  25098758 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtc---aaggttgtaccaaatggttgttcaaatatcattg 25098683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 40605385 - 40605309
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |  || |||||  ||||||||||||||||||||    
T  40605385 ttttgaccaatgagaagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 40605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 31244705 - 31244623
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||||||||| || |   |||||  ||| ||| |||| ||||| ||||||||||||||||||||    
T  31244705 cattgtttttgaccaatgagaagagagaacaacatggttgtcccaaatgttgtaccaaaatagttgttcaaatatcattgctc 31244623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 47059860 - 47059778
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||| || |||||||  |||| |  || |||||  ||||||||||||||||||||    
T  47059860 cattgtttttgaccaatgaaaagagagaaaaataagattgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 47059778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 48325323 - 48325355
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaag 152  Q
    |||||||||||||||||||||||||||||||||    
T  48325323 cattgtttttgaccaatgagaagagagaaaaag 48325355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 9011746 - 9011788
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  9011746 cattgtttttgaccaataagaagagagaaaaacaagattgtca 9011788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 37947190 - 37947112
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcatt 197  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||| ||| | || ||||| ||||||||||||||||    
T  37947190 cattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaacaaaatagttgttcaaatatcatt 37947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 38627413 - 38627331
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctca 202  Q
    |||||||||||||||| ||||||| |||||| |||||||||  ||| ||||| || |||||  ||| ||||||||||| ||||    
T  38627413 attgtttttgaccaataagaagagggaaaaataatattgtcttaaaagttatcacaaaatagatgtacaaatatcattactca 38627331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 41885822 - 41885868
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaa 166  Q
    ||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  41885822 cattgtttttgaccaatcagaatagagaaaaagaaggttgtcaaaaa 41885868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 2827679 - 2827622
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||| ||||||||||| || || ||||||  ||||||| |||||||    
T  2827679 attgtttttgaccaataagaagagagaacaacaaaattgtctcaaaggttgtaccaaa 2827622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 11460895 - 11460972
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||| |||||||||||| | |||| ||| ||||||  |||||||||| ||| || |||||  ||||||||||||||||    
T  11460895 cattatttttgaccaataaaaagaaagagaaagaaggttgtcaaaaaagttgtatcaaattgttgttcaaatatcatt 11460972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 46903572 - 46903629
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||||| || ||  |||||  ||||||| |||||||    
T  46903572 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaa 46903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 16987548 - 16987580
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaag 152  Q
    ||||||||||||||||||| |||||||||||||    
T  16987548 cattgtttttgaccaatgaaaagagagaaaaag 16987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 51168738 - 51168654
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctcat 203  Q
    |||||||||| |||||| |||| ||||||||| || ||||||| ||| ||| | | |||||  |||||||||||||||| |||||    
T  51168738 cattgtttttaaccaataagaaaagagaaaaaaaaaattgtcataaaagttgttagcaaatggttgttcaaatatcatttctcat 51168654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 43409335 - 43409253
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| |||||||||||| || ||||||||| || |||||| |||||||||||||||||||| ||||||    
T  43409335 cattgtttttgaccaatgaaaagagagaaaaaaaagattgtcaaatagattatactaaataattgttcaaatatcaatgctca 43409253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 29800519 - 29800442
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||| |||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||    
T  29800519 cattatttttgaccaatgaaaagagagaaaaagaagattttcaaataggttgtaccaaataattgttcaaatatcatt 29800442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 1031397 - 1031314
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||| |||||| ||||||| ||  |||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  1031397 cattgtttttgaccaataagaagaaagaaaaataaagttgtcataaaagttgtaccaaataattgttcaaatatcattgctcat 1031314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 41717364 - 41717442
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattg 198  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||  ||| |||||||||||||    
T  41717364 cattgtttttgaccaatgaaaagagagaaaaagaagattgtcaaatagattataccaaatggttgatcaaatatcattg 41717442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 31326809 - 31326890
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||| || || ||||||||  ||||||||||||||||||||    
T  31326809 cattgtttttgaccaatgaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 31326890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 1901896 - 1901815
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  |||||||||||| |||||||    
T  1901896 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctc 1901815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 1911342 - 1911261
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  |||||||||||| |||||||    
T  1911342 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctc 1911261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 25959512 - 25959431
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| || |||||  ||||||||||||||||||||    
T  25959512 cattgtttttgaccaatgaaaagagagaaaatgaaagttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 25959431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 32795937 - 32796018
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | ||||||||||| |||  |||||||| ||||| ||||||||  ||||||||||||||||||||    
T  32795937 cattgtttttgaccaataaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 32796018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 44593067 - 44593148
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| || |||||||| |||  |||||||||| ||| |||||||| ||| |||||||||||||||||    
T  44593067 cattgtttttgaccaatgaaaatagagaaaatgaaggttgtcaaaaaagttgtaccaaatgattattcaaatatcattgctc 44593148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 7867679 - 7867598
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||| || || ||||||||  ||||||||||||||||||||    
T  7867679 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 7867598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 32981091 - 32981010
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||| ||||||||| ||||| |||||  ||||||||||  || ||||||||  ||||||||||||||||||||    
T  32981091 cattgtttttgacaaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 32981010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 50294094 - 50294013
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||| |||||| |||||||||||||||  |||||||| | ||| ||||||||  ||||| ||||||||||||||    
T  50294094 cattgtttttgatcaatgaaaagagagaaaaagaaagttgtcaaataagttgtaccaaatggttgttaaaatatcattgctc 50294013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 1295434 - 1295514
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||| |||| ||||||||||  |||||||||  ||| || |||||  ||||||||||||||||||||    
T  1295434 attgtttttgaccaatgaaaagatagaaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatcattgctc 1295514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 34607889 - 34607808
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| | |||||| ||||||||||| |||  |||||||| || || ||||||||| ||||||||||||| ||||||    
T  34607889 cattgttttttatcaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcgttgctc 34607808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 462371 - 462291
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    |||||||||| | |||||| |||||||||||  ||  |||||||| ||||| ||||||||  |||||||||||||||||||    
T  462371 cattgttttttatcaatgaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 981571 - 981651
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    |||| |||||||||||||| ||||||||||| |||  |||||||| ||| | ||| ||||  |||||||||||||||||||    
T  981571 cattatttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggctgtactaaatggttgttcaaatatcattgct 981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 29706004 - 29706092
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcatgtttt 208  Q
    |||||||||| |||||||| ||||||||||||  |  |||||| ||| ||| || |||||| |||||||||||||| | ||||||||||    
T  29706004 cattgttttttaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactcatgtttt 29706092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 7231976 - 7231901
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  | ||||||| ||| ||| || |||||  ||||||||||||||    
T  7231976 cattgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatca 7231901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 47276386 - 47276469
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||||||||||||||||| |  |||||| | ||| |  || || || ||||||||||||||||||||||    
T  47276386 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcatagaagttgttagcacatgattgttcaaatatcattgctca 47276469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 46473229 - 46473306
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| || |||||  ||||||||||||||||    
T  46473229 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcatt 46473306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 30400126 - 30400084
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  30400126 cattgtttttgaccaataagaagagagaaaaacaagattgtca 30400084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 11173551 - 11173624
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatat 193  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| || |||||  ||||||||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatat 11173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 50025654 - 50025597
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||||| || ||  |||||  ||||||| |||||||    
T  50025654 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaa 50025597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 2280278 - 2280306
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaa 148  Q
    |||||||||||||||||||||||||||||    
T  2280278 cattgtttttgaccaatgagaagagagaa 2280306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 33971984 - 33972068
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctcat 203  Q
    |||||||||| |||||||||||||||||| || ||  |||||  |||  || |||| ||||| |||||||||||||||| |||||    
T  33971984 cattgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaaattgtaccaaaatagttgttcaaatatcattactcat 33972068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 53715422 - 53715494
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcatt 197  Q
    ||||||| ||||||||||||||||||| |  |||||| ||||| |  || |||||| ||||||||||||||||    
T  53715422 ttttgactaatgagaagagagaaaaaggaggttgtcataaaagttgttatcaaatagttgttcaaatatcatt 53715494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 16564 - 16481
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||| ||| ||||||||  ||||| ||||||||||||||||    
T  16564 cattgtttttgaccaatgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctcat 16481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 56280 - 56363
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||| ||| ||||||||  ||||| ||||||||||||||||    
T  56280 cattgtttttgaccaatgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctcat 56363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 9636128 - 9636046
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  |||||||||||||||||||||    
T  9636128 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 9636046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 582837 - 582757
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||| |||||||| ||||||  ||||||||||  || |||||||| ||||||||||||||||||||||    
T  582837 ttgtttttgaccaatgaaaagagagagaaagaaggttgtcaaaaatcttgtaccaaatgattgttcaaatatcattgctca 582757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 7080615 - 7080696
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||| |||||||||||||| |||  | ||| |||||||||||||||| ||||||||||||| |||||||||    
T  7080615 cattgtttttgaccaataagaagagagaaaaaaaat--tatcataaaggttataccaaatgattgttcaaatattattgctcat 7080696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 15639486 - 15639567
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||| || |||||||||||| ||||| |||||  |||||||||||||| ||||||||  ||||||||||||||||||||    
T  15639486 cattgttcttcaccaatgagaagggagaagaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctc 15639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 24792559 - 24792634
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  ||||||||||||||||||||    
T  24792559 ttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 24792634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 91316 - 91397
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||  ||  |||||||| ||||| || |||||  ||||||||||||||||||||    
T  91316 cattgtttttgaccaatgaaaagagagaaaagaaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 91397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 6865757 - 6865676
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||||||||  ||  |||||||| || ||||| |||||| |||||||||||| |||||||    
T  6865757 cattgtttttgaccaatgaaaagagagaaaataaaagttgtcaaatagattatatcaaatagttgttcaaatattattgctc 6865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 7144678 - 7144758
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||| ||||||||| | |||||||||||||||  |||||||||||||| || |||||  ||| |||||||||||||||||    
T  7144678 ttgttattgaccaataaaaagagagaaaaagaaggttgtcaaaaaggttgtatcaaatggttgctcaaatatcattgctca 7144758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 38387817 - 38387892
Alignment:
Q  125 tttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||| |||| |||||||||||||| || ||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  38387817 tttttgatcaataagaagagagaaaaaaaa-attgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 38387892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 36624419 - 36624502
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||| |  || || |||||  |||||||||||||||| |||||    
T  36624419 cattgtttttgaccaatgaaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcattactcat 36624502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 19437359 - 19437441
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    |||||||||||||||| | |||||||||||  ||  |||||||||| ||| ||| ||||| |||||||||||||| |||||||    
T  19437359 attgtttttgaccaatcaaaagagagaaaagaaaggttgtcaaaaatgttgtactaaatagttgttcaaatatcagtgctcat 19437441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 26627431 - 26627513
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||| | | || ||||||||||||  ||||||  || ||| ||||||||| |||||||||||||||||||||    
T  26627431 cattgtttttgaccattaataaaagagaaaaagaaggttgtcatgaaagttgtaccaaatagttgttcaaatatcattgctca 26627513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 5698298 - 5698217
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || ||||||||||||  ||||||  || ||| |||||||| ||||||| |||||||||||||    
T  5698298 cattgtttttgaccaataacaaaagagaaaaagaaggttgtcatgaaagttgtaccaaatgattgttctaatatcattgctc 5698217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 36581437 - 36581356
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | |||||| |||| |||  |||||||| ||||| ||| ||||  ||||||||||||||||||||    
T  36581437 cattgtttttgaccaataaaaagagaaaaaatgaaggttgtcaaataggttgtacaaaatggttgttcaaatatcattgctc 36581356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 28904093 - 28904178
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataa----ttgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || |||||||| |||  |||||||| ||||| ||||||||||    ||||||||||||||||||||    
T  28904093 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 28904178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 28940488 - 28940573
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataa----ttgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || |||||||| |||  |||||||| ||||| ||||||||||    ||||||||||||||||||||    
T  28940488 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 28940573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 11880957 - 11880874
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    |||||||||||||||||||||||||||||||||||  ||||||   ||| |  || ||||| |||||| |||||||||||||||    
T  11880957 cattgtttttgaccaatgagaagagagaaaaagaaggttgtcattgaagttgttagcaaatgattgttaaaatatcattgctca 11880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 13734330 - 13734248
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| || || ||||||||  ||||||| |||  ||||||||    
T  13734330 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaatagattgtaccaaatggttgttcatatacaattgctca 13734248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 39595375 - 39595457
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| || |||||  |||||||||||||||| ||||    
T  39595375 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactca 39595457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 33567209 - 33567134
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  | ||||||| ||| ||| || |||||  ||||||| ||||||    
T  33567209 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatca 33567134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 34381113 - 34381188
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| |||  ||||| |||||  ||||||||||||||    
T  34381113 cattgtttttgaccaatgaaaagagagaaaaacgaagttgtcacaaaaattatatcaaatggttgttcaaatatca 34381188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 2051027 - 2051069
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||    
T  2051027 cattgtttttgaccaataagaagagagaaaaacaatgttgtca 2051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 3518284 - 3518342
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||||||| |||||||    
T  3518284 cattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaa 3518342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 9596784 - 9596742
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  9596784 cattgtttttgaccaataagaagagagaaaaacaagattgtca 9596742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 12512894 - 12512936
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  12512894 cattgtttttgaccaataagaagagagaaaaacaagattgtca 12512936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 12612987 - 12612909
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||| ||| |||| ||||  ||||||||||||||||    
T  12612987 cattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaatatcatt 12612909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 17489449 - 17489491
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  17489449 cattgtttttgaccaataagaagagagaaaaacaagattgtca 17489491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 20040887 - 20040921
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaa 154  Q
    ||||||||||||||||||||||||||||| |||||    
T  20040887 cattgtttttgaccaatgagaagagagaagaagaa 20040921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 32732089 - 32732005
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaata---ttgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||| ||| |||||||||| | |||| |   |||||| |||| || ||||||||  ||||||||||||||||||||    
T  32732089 cattgtttttgactaataagaagagagagagagaaaaaagttgtcataaagattgtaccaaatggttgttcaaatatcattgctc 32732005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 43153030 - 43152952
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||  ||| |||| ||||| ||||||||||||||||    
T  43153030 cattgtttttgaccaatgagaagagagaacaacaaagttgtcctaagagttgtaccaaaatagttgttcaaatatcatt 43152952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 8442261 - 8442338
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    ||||||| |||||||||||||||||||| || || |||||   |||  ||||||| ||||| ||||||||||||||||    
T  8442261 attgtttctgaccaatgagaagagagaacaacaaaattgttccaaaaattataccaaaatagttgttcaaatatcatt 8442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 19563515 - 19563556
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  19563515 attgtttttgatcaattaaaagagagaaaaagaatattgtca 19563556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 25345440 - 25345481
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    |||||||||||||||| |||||||||||||| || |||||||    
T  25345440 attgtttttgaccaataagaagagagaaaaataagattgtca 25345481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 26626789 - 26626708
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || ||||||||| ||  ||||||  || ||| || |||||  ||||||||||||||||||||    
T  26626789 cattgtttttgaccaataacaaaagagaaaaaaaaggttgtcatgaaagttgtaacaaatggttgttcaaatatcattgctc 26626708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 33243711 - 33243634
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||||||||| |||||||| ||||||||||||  | ||||||| ||| |||||   ||||  ||||||||||||||||    
T  33243711 cattgtttttaaccaatgaaaagagagaaaaaataaattgtcacaaaagttatctgaaatggttgttcaaatatcatt 33243634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 10469917 - 10469889
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaa 148  Q
    |||||||||||||||||||||||||||||    
T  10469917 cattgtttttgaccaatgagaagagagaa 10469889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 20125493 - 20125521
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaa 150  Q
    |||||||||||||||||||||||||||||    
T  20125493 ttgtttttgaccaatgagaagagagaaaa 20125521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 40201090 - 40201018
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaata 192  Q
    ||||||| |||||||||||||||| |||| || ||  |||||| ||| ||| ||| ||| |||||||||||||    
T  40201090 cattgttattgaccaatgagaagaaagaataacaaggttgtcacaaaagttgtacaaaaaaattgttcaaata 40201018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 28676124 - 28676042
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||||||| ||| ||||  ||||| |||||||||||||||    
T  28676124 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgtttaaatatcattgctca 28676042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 46567030 - 46567111
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  ||||||||||||||||||||    
T  46567030 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 46567111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 12638925 - 12639002
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||| ||||| || |||||| ||||||||||||||||    
T  12638925 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaacaaatagttgttcaaatatcatt 12639002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 18874894 - 18874812
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||||||||||||| |  |||||| ||||| |  || ||||| |||||||||||||||||||||    
T  18874894 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 18874812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 23837070 - 23836988
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||| ||| | ||||||||||||||| ||| ||||| | ||| |||||||| |||||| |||||||||||||||    
T  23837070 cattgtttttgactaattaaaagagagaaaaagaaaattatcaaataagttgtaccaaatgattgtttaaatatcattgctca 23836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 5234441 - 5234352
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcatgtttta 209  Q
    ||||||||||||||||| | |||||||||||| || ||||||| ||| ||| || |||||  |||||||||||||| | ||||| |||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcatatttta 5234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 30778234 - 30778157
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||||||||| |||||| | ||||||||||||  | ||||||| ||| |||||| |||||| ||||||||||||||||    
T  30778234 cattgtttttaaccaataaaaagagagaaaaaagaaattgtcataaaagttatatcaaatagttgttcaaatatcatt 30778157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 33438147 - 33438228
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    |||||||||||||||| | ||||||||||| |||  || ||||||| ||| ||||||||  ||||| |||||||||||||||    
T  33438147 attgtttttgaccaataaaaagagagaaaatgaaggttatcaaaaaagttgtaccaaatggttgtttaaatatcattgctca 33438228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 37977216 - 37977297
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| ||||| || ||||| |||||||||| | || ||||||||||| ||| ||||||||  ||||||||||||||||||||    
T  37977216 cattattttttactaatgaaaagagagaaagaaaaaattgtcaaaaatgttgtaccaaatggttgttcaaatatcattgctc 37977297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 16508942 - 16508870
Alignment:
Q  125 tttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcatt 197  Q
    |||||||||||||| ||||||||||| |||  |||||||  ||||| |||||||| |||||||||||| ||||    
T  16508942 tttttgaccaatgaaaagagagaaaatgaaggttgtcaagtaggttgtaccaaattattgttcaaatagcatt 16508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 31275247 - 31275322
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  | ||||||| ||| ||| || |||||  ||||||||||||||    
T  31275247 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatca 31275322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 40847470 - 40847550
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    |||||||||| |||||||| |||||  ||||||||  |||||||||||||| |  |||||  |||||||||||||||||||||    
T  40847470 cattgttttttaccaatgaaaagag--aaaaagaaggttgtcaaaaaggttgtgtcaaatggttgttcaaatatcattgctca 40847550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 43982998 - 43983080
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||||||||| ||  | ||||||  ||| ||| |||| ||||  ||||||||||||||||||||    
T  43982998 cattgtttttgaccaatgagaagagagaacaactagattgtcctaaaagttgtaccaaaatggttgttcaaatatcattgctc 43983080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 54801097 - 54801179
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaa-gaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| | |||||| ||||| |||  |||||||| |  || ||||||||||||||||||||||||||||||    
T  54801097 cattatttttgaccaataaaaagagaaaaaaatgaaggttgtcaaataaattgtaccaaataattgttcaaatatcattgctc 54801179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 55510960 - 55511041
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||| ||| || |||||||| |||  || ||||| | ||| ||||||||  ||||||||||||||||||||    
T  55510960 cattgtttttgaccattgaaaatagagaaaaggaaagttttcaaataagttgtaccaaatggttgttcaaatatcattgctc 55511041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 34027997 - 34028029
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaag 152  Q
    |||||||||||||||||||||||||||||||||    
T  34027997 cattgtttttgaccaatgagaagagagaaaaag 34028029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 7795102 - 7795184
Alignment:
Q  123 tgtttttgaccaatgagaagagagaaaaagaata--ttgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    |||||||||||||| |||||| |||| || || |  |||||| ||||||| || |||||  ||||||||||||||||||||||    
T  7795102 tgtttttgaccaataagaagaaagaagaaaaaaaagttgtcataaaggttgtatcaaatggttgttcaaatatcattgctcat 7795184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 31318850 - 31318925
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaa-ataattgttcaaatatca 195  Q
    ||||||||| |||||||||||||||||| || || ||||||  ||||||| |||||| ||||||||  ||||||||    
T  31318850 attgtttttaaccaatgagaagagagaagaataaaattgtcttaaaggttgtaccaatataattgtcaaaatatca 31318925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 2193779 - 2193737
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  2193779 cattgtttttgaccaataagaagagagaaaaacaagattgtca 2193737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 3223090 - 3223124
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaa 154  Q
    ||||||||||||||||| |||||||||||||||||    
T  3223090 cattgtttttgaccaataagaagagagaaaaagaa 3223124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 9827955 - 9827897
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||| || || ||  |||||  |||||||||||||||    
T  9827955 cattgtttttgaccaatgagaagagataacaacaaagttgtctcaaaggttataccaaa 9827897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 22071600 - 22071658
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaat 179  Q
    ||||||||| |||||| |||||||||||||||||  |||||||| | ||| ||||||||    
T  22071600 attgtttttaaccaataagaagagagaaaaagaaagttgtcaaacaagttgtaccaaat 22071658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 31221514 - 31221556
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  31221514 cattgtttttgaccaataagaagagagaaaaacaagattgtca 31221556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 34259931 - 34260005
Alignment:
Q  124 gtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcatt 197  Q
    ||||||||||||| |||||||||||||||||  |||||| ||| ||| | |||||||  |||| |||||||||||    
T  34259931 gtttttgaccaataagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcatt 34260005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 42915188 - 42915114
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||| |||||||| ||||||||||||  |  |||||| ||| ||| || |||||| ||||||||||||||    
T  42915188 attgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 42915114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 4514234 - 4514193
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    |||||||| ||||||||||||||||||||| ||| |||||||    
T  4514234 attgttttggaccaatgagaagagagaaaatgaaaattgtca 4514193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 6686148 - 6686225
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcatt 197  Q
    |||||||||||||||| |||||||||||||   | ||||||| |||  |||| ||||||  |||||||||||||||||    
T  6686148 attgtttttgaccaataagaagagagaaaagatagattgtcacaaaaattatcaccaaaagattgttcaaatatcatt 6686225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 33575043 - 33574966
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    |||||||||||||||| | || |||||||||||| | ||||| ||| ||| | || |||||||||| |||||||||||    
T  33575043 attgtttttgaccaataaaaaaagagaaaaagaagagtgtcacaaaagttgtcccgaaataattgtacaaatatcatt 33574966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 25936341 - 25936393
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat 172  Q
    ||||||||||||||||| |||| ||||||||| || ||||||| ||| |||||    
T  25936341 cattgtttttgaccaataagaaaagagaaaaacaagattgtcacaaaagttat 25936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 38889033 - 38889061
Alignment:
Q  175 caaataattgttcaaatatcattgctcat 203  Q
    |||||||||||||||||||||||||||||    
T  38889033 caaataattgttcaaatatcattgctcat 38889061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 337219 - 337300
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| | || |||||||||||| ||||| |||||  || ||||||||||||||||||||||||||||||    
T  337219 cattgtttttgaccaataaaaaaagagaaaaagaaaattgtaaaaaatattgtaccaaataattgttcaaatatcattgctc 337300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 32729991 - 32730071
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||| |||||| |||||||||||||||| |||||||| ||||| ||||||||  ||||||| ||||||||||||    
T  32729991 attgtttttgatcaatgaaaagagagaaaaagaatgttgtcaaataggttgtaccaaatggttgttcatatatcattgctc 32730071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 8173282 - 8173200
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    |||||||| |||||||||| |||||||||||  ||  |||||||| ||||||||||||||  |||||||||||||||||||||    
T  8173282 cattgtttctgaccaatgaaaagagagaaaagaaaggttgtcaaataggttataccaaatggttgttcaaatatcattgctca 8173200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 16533230 - 16533148
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa-taattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||| ||||||||||||| | |||||||||||||||||||||    
T  16533230 cattgttttttaccaatgaaaagagagaaaaggaaagttgtcaaataggttataccaaattgattgttcaaatatcattgctc 16533148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 21443789 - 21443870
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||| |||||| |||| |||  ||||| || || || ||||||||| ||||||||||||||||||||    
T  21443789 cattgtttttgaccaatgaaaagagataaaatgaaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctc 21443870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 25561910 - 25561831
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| |||||||||||||| ||| |||||| ||||||  ||||||||| ||||||||||||||||||||    
T  25561910 cattatttttgaccaataagaagagagaaaaa-aat-ttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 25561831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 26101424 - 26101345
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| |||||||||||||| ||| |||||| ||||||  ||||||||| ||||||||||||||||||||    
T  26101424 cattatttttgaccaataagaagagagaaaaa-aat-ttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 26101345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 25567460 - 25567380
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    |||| |||||||||||| |||||||| ||||| |   |||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  25567460 cattatttttgaccaataagaagagaaaaaaaaa---ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctcat 25567380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 32253881 - 32253957
Alignment:
Q  120 cattgtttttgaccaatgagaagagaga-aaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| |||||||| |||| || ||||||| ||| ||| ||||||||| ||||||||||||||    
T  32253881 cattgtttttaaccaatgaaaagagagagaaaaaaaaattgtcacaaaagttgtaccaaatagttgttcaaatatca 32253957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 608631 - 608549
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||||||||||||||| || ||  |||||  ||  ||| |||| ||||| ||||||||||||||||||||    
T  608631 cattgtttttgaccaatgagaagagagaacaacaaggttgtcccaacagttgtaccaaaatagttgttcaaatatcattgctc 608549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 11742953 - 11742922
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaag 152  Q
    ||||||||||||||||||||||||||||||||    
T  11742953 attgtttttgaccaatgagaagagagaaaaag 11742922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 3089058 - 3089092
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaa 154  Q
    ||||||||||||||||||||||||||||| |||||    
T  3089058 cattgtttttgaccaatgagaagagagaagaagaa 3089092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 12044431 - 12044513
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||||||||||||||| |||||||||| |  |||||| ||||| |  || || ||  ||||||||||||||||||||    
T  12044431 cattgtttttgaccaatgagaaaagagaaaaaggaggttgtcataaaagttgttagcacatggttgttcaaatatcattgctc 12044513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 16743235 - 16743205
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaa 151  Q
    |||||||||||||||||||||||||||||||    
T  16743235 attgtttttgaccaatgagaagagagaaaaa 16743205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 17902662 - 17902624
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatatt 158  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  17902662 cattgtttttgaccaataagaagagagaaaaacaatatt 17902624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 22422251 - 22422329
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatacc-aaataattgttcaaatatcatt 197  Q
    ||||||||||||| ||||||||||||||| || ||  ||||   ||| ||| |||| ||||||||||||||||||||||    
T  22422251 cattgtttttgactaatgagaagagagaacaacaaagttgtaccaaaagttgtaccaaaataattgttcaaatatcatt 22422329  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 5167712 - 5167633
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgc 199  Q
    ||||||||||||||||||| ||||||||||| |||  |||||||  ||||||||||||||  ||||||||||||||||||    
T  5167712 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaagtaggttataccaaatggttgttcaaatatcattgc 5167633  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 10288255 - 10288327
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatc 194  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| || || |||||||||||| ||||||||||    
T  10288255 ttgtttttgaccaatgaaaagagagaaaaggaagattgtcaaatagattgtaccaaataattattcaaatatc 10288327  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 32128232 - 32128313
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    |||||||||||||||| | |||||||||||| || ||| ||| |||| || ||||||||| ||||||||||||||||||||||    
T  32128232 attgtttttgaccaataaaaagagagaaaaaaaa-attatcataaagattgtaccaaatagttgttcaaatatcattgctcat 32128313  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 305939 - 305855
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaata-ttgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||| ||||||| |||||||||| ||| || | |||||| |||| || |||||||| |||||||||||||||||||||||    
T  305939 cattgttttcgaccaataagaagagagagaaaaaaaagttgtcataaagattgtaccaaatgattgttcaaatatcattgctcat 305855  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 11126565 - 11126644
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgct 200  Q
    |||||||||||| |||| |||||| ||||||| || ||||||| |||||||  ||||||| ||||||||||||||||||||    
T  11126565 cattgtttttgatcaataagaagaaagaaaaataa-attgtcataaaggttgaaccaaatgattgttcaaatatcattgct 11126644  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 21805755 - 21805675
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||| |||||||||||| |||||||||| |||||  ||||||||||| || ||||||||  ||||| ||||||||||||||    
T  21805755 attgcttttgaccaatgggaagagagaataagaaggttgtcaaaaagattgtaccaaatggttgttaaaatatcattgctc 21805675  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 3091842 - 3091917
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| || |||||||||||||||||||||    
T  3091842 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatca 3091917  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 19668157 - 19668078
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgc 199  Q
    ||||||||||||||||||| ||||||||||| |||  || ||||| ||||| || |||||  ||||||||||||||||||    
T  19668157 cattgtttttgaccaatgaaaagagagaaaaggaaggttatcaaataggttgtatcaaatggttgttcaaatatcattgc 19668078  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 30856908 - 30856986
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattg 198  Q
    ||||||||||||||||||| |||||||||||||||  |||||||| |  || ||||||||  ||||||| |||||||||    
T  30856908 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaataaattgtaccaaatggttgttcatatatcattg 30856986  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 40951291 - 40951372
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||| ||||| |||| |||  ||||||| ||||||||||||    
T  40951291 cattgttttttaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtacctaatggttgttcatatatcattgctc 40951372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 13553244 - 13553316
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaata 192  Q
    |||| |||||||||||||| |||||||||||  || ||||||||| ||||| ||||||||  |||||||||||    
T  13553244 cattatttttgaccaatgaaaagagagaaaagaaagattgtcaaataggttgtaccaaatggttgttcaaata 13553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 4842489 - 4842406
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctcat 203  Q
    ||||||||||||||||||| || |||||||| |||  |||||||| ||||| || |||||  | ||||| ||||||||||||||    
T  4842489 cattgtttttgaccaatgaaaaaagagaaaatgaaggttgtcaaataggttgtatcaaatggtagttcatatatcattgctcat 4842406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 14140309 - 14140234
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    ||||||||||||||||||| ||||||||||||  | ||||||| ||| |||||   |||| |||||||||||||||    
T  14140309 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttattttaaatgattgttcaaatatca 14140234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 37631337 - 37631254
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||||||||||||||||  |  |||||| ||||| |  || |||||  |||||||||||||||||||||    
T  37631337 cattgtttttgaccaatgagaagagagaaaaaagaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctca 37631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 23358549 - 23358516
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaaga 153  Q
    ||||||||||||||||||||||||||||||||||    
T  23358549 cattgtttttgaccaatgagaagagagaaaaaga 23358516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 34373110 - 34373167
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||||||||||||| || ||  |||||  |||||||||||||||    
T  34373110 attgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttataccaaa 34373167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 36763488 - 36763408
Alignment:
Q  122 ttgtttttgaccaatgagaagagagaaaaagaatattgtca-aaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||||||| |||||||||||||||  |||||| ||||  |  || |||||  ||||||||||||||||||||    
T  36763488 ttgtttttgaccaatgaaaagagagaaaaagaaggttgtcataaaaattgttaacaaatggttgttcaaatatcattgctc 36763408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 694370 - 694453
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctca 202  Q
    ||||||||||||||||||| || ||||| |||  |  |||||| ||| ||||| | ||||| ||||||||||||||||||||||    
T  694370 cattgtttttgaccaatgaaaaaagagataaatgaggttgtcataaaagttattagcaaatgattgttcaaatatcattgctca 694453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 11164346 - 11164271
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| ||||||||||||  |  |||||| ||| ||| || |||||| ||||||||||||||    
T  11164346 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 11164271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 13711162 - 13711237
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| ||||||||||||  |  |||||| ||| ||| ||| ||||| ||||||||||||||    
T  13711162 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtacaaaatagttgttcaaatatca 13711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 3959997 - 3960078
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttatac-caaataattgttcaaatatcattgct 200  Q
    |||||||||||| |||||| ||||||||||||  | ||||||| ||| ||| | | |||||  |||||||||||||||||||    
T  3959997 cattgtttttgatcaatgaaaagagagaaaaatgaaattgtcataaaagttgttcgcaaatggttgttcaaatatcattgct 3960078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 4858215 - 4858272
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaa 178  Q
    |||||||||||||||||| ||||||||| || || ||||||  ||||||| |||||||    
T  4858215 attgtttttgaccaatgaaaagagagaacaacaaaattgtctcaaaggttgtaccaaa 4858272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 19637364 - 19637409
Alignment:
Q  156 attgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  19637364 attgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 19637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 19835957 - 19836002
Alignment:
Q  156 attgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  19835957 attgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 19836002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 34942 - 35017
Alignment:
Q  126 ttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    ||||||||||||| ||||||||||| |||  |||||||| ||||| ||||||||  ||||||||||||||||||||    
T  34942 ttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 35017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 440819 - 440900
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatcattgctc 201  Q
    |||||||||| |||||||| |||||||||||  || ||||||||| || || ||||||||  ||||||||||||||||||||    
T  440819 cattgttttttaccaatgaaaagagagaaaagaaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 440900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 15158 - 15084
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| || ||||||||||||  |||||| ||| ||| ||||||||| ||||||||||||||    
T  15158 cattgtttttaaccaatgaaaaaagagaaaaagaag-ttgtcacaaaagttgtaccaaatagttgttcaaatatca 15084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 4820 - 4745
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaa-ataattgttcaaatatca 195  Q
    ||||||||| |||||||||||||||||| || || ||||||  ||||||| |||||| ||||||||  ||||||||    
T  4820 attgtttttaaccaatgagaagagagaagaataaaattgtcttaaaggttgtaccaatataattgtcaaaatatca 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 18105 - 18179
Alignment:
Q  120 cattgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttataccaaataattgttcaaatatca 195  Q
    |||||||||| |||||||| |||||||||||| ||  |||||| ||| ||| || |||||| ||||||||||||||    
T  18105 cattgtttttaaccaatgaaaagagagaaaaa-aaagttgtcataaaagttgtatcaaatagttgttcaaatatca 18179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 204416 - 204334
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtcaaaaaggttat-accaaataattgttcaaatatcattgctca 202  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||| ||| | ||||||   ||||| |||||||||| ||||    
T  204416 attgtttttgaccaataagaagagagaaaaagtagattgtcacaaaagttgtcaccaaaaggttgtttaaatatcattactca 204334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 682 - 641
Alignment:
Q  121 attgtttttgaccaatgagaagagagaaaaagaatattgtca 162  Q
    |||||||||||||||| |||||||| |||||||| |||||||    
T  682 attgtttttgaccaataagaagagaaaaaaagaagattgtca 641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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