View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_low_15 (Length: 272)
Name: NF1710_low_15
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 49464313 - 49464557
Alignment:
| Q |
10 |
gtagcatagggacaagatagtacctaccagccagtaatccaggaagcaaaaggtgcccaattgggaccagcaagtttggcactccaatagtaaagaccac |
109 |
Q |
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| T |
49464313 |
gtagcatagggacaagatagtacctaccagccagtaatccaggaagcaaaaggtgcccaattgggaccagcaagtttggcactccaatagtaaagaccac |
49464412 |
T |
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| Q |
110 |
cagaagttggatatgaagaacatatttcagccatagacaaagcaacaagcatggtgaaagctgaagctataagccatccatatacaagtgaaacaggacc |
209 |
Q |
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| T |
49464413 |
cagaagttggatatgaagaacatatttcagccatagacaaagcaacaagcatggtgaaagctgaagctataagccatccatatacaagtgaaacaggacc |
49464512 |
T |
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| Q |
210 |
tccatagtttaaaccagtgttgtaaagtgttgttactccagttaa |
254 |
Q |
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| T |
49464513 |
tccatagtttaaaccagtgttgtaaagtgttgttactccagttaa |
49464557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 49471499 - 49471698
Alignment:
| Q |
34 |
taccagccagtaatccaggaagcaaaaggtgcccaattgggaccagcaagtttggcactccaatagtaaagaccaccagaagttggatatgaagaacata |
133 |
Q |
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| T |
49471499 |
taccagccagtaatccaggaggcaaaaggtgcccatttggagccagcaagtttggcactccaatagtaaagaccaccggaagttggaaaagctgaacaaa |
49471598 |
T |
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| Q |
134 |
tttcagccatagacaaagcaacaagcatggtgaaagctgaagctataagccatccatatacaagtgaaacaggacctccatagtttaaaccagtgttgta |
233 |
Q |
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| T |
49471599 |
tttcagccattgaaagtgcaacaagcatggtaaaagcagaagccaaaaaccaaccatattgcatagaaactgggccaccatagttcaacccagtgttgta |
49471698 |
T |
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