View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_low_17 (Length: 257)
Name: NF1710_low_17
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34484470 - 34484355
Alignment:
| Q |
1 |
ataagataattgagaaaaatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaat |
100 |
Q |
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| T |
34484470 |
ataagataattgagaaaaatatgaaggaattggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgtgattttgat |
34484371 |
T |
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| Q |
101 |
tgatgttatttcaatc |
116 |
Q |
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| T |
34484370 |
tgatgttatttcaatc |
34484355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 34484315 - 34484227
Alignment:
| Q |
156 |
gttattatatatcaactgtttttcgcttgttaaattttgcacacttttatgctttatctgacattatcagtttttcctaatgataacgg |
244 |
Q |
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| T |
34484315 |
gttattatatatcaactgttttttgcttgttaaattttgcacacttaaatgctttatctgacattatcagtttttcctaatgataacgg |
34484227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34520161 - 34520055
Alignment:
| Q |
1 |
ataagataattgagaaaaatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaat |
100 |
Q |
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| T |
34520161 |
ataagctaattgagaaaaagatgaaggagattgatgacaagattgttgcactcagtttatgaaattgttgttgtcttaaactttatgttgtgattttgat |
34520062 |
T |
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| Q |
101 |
tgatgtt |
107 |
Q |
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| T |
34520061 |
tgatgtt |
34520055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 34498549 - 34498449
Alignment:
| Q |
15 |
aaaaatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgttatttcaa |
114 |
Q |
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| T |
34498549 |
aaaaatatgaaagaaattgatgacaagatggcttcacttagtttatcaaactgatgttttctaaaaccttatgttgtgatttttattgatgttatttcaa |
34498450 |
T |
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| Q |
115 |
t |
115 |
Q |
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| |
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| T |
34498449 |
t |
34498449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3317052 - 3316939
Alignment:
| Q |
1 |
ataagataattgagaaaaatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaat |
100 |
Q |
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||||| ||||||| ||||||||||||||||| ||||| ||||| | |||||||||||||| ||||||||| ||||||| ||||||||| |||||| || |
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| T |
3317052 |
ataagttaattgaaaaaaatatgaaggaaattgatgacaagatggcttcacttagtttatcaaattgatgttttctaaaa-tttatgttgtgatttttat |
3316954 |
T |
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| Q |
101 |
tgatgttatttcaat |
115 |
Q |
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||||||||||||||| |
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| T |
3316953 |
tgatgttatttcaat |
3316939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 9598439 - 9598333
Alignment:
| Q |
9 |
attgagaaaaatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgtta |
108 |
Q |
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||||| |||||| |||||||||| ||||| ||||| | |||||||||||||| | | ||||| ||||||||||||||||| ||||| | |||||||| |
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| T |
9598439 |
attgaaaaaaatctgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaactttatgttgttatttttactgatgtta |
9598340 |
T |
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| Q |
109 |
tttcaat |
115 |
Q |
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||||||| |
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| T |
9598339 |
tttcaat |
9598333 |
T |
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