View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_low_26 (Length: 226)

Name: NF1710_low_26
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_low_26
NF1710_low_26
[»] chr6 (22 HSPs)
chr6 (5-210)||(4835502-4835707)
chr6 (141-200)||(4299318-4299377)
chr6 (141-200)||(4514618-4514677)
chr6 (141-199)||(4259652-4259710)
chr6 (141-200)||(3172317-3172376)
chr6 (141-200)||(4256121-4256180)
chr6 (141-199)||(4461699-4461757)
chr6 (141-203)||(4598747-4598809)
chr6 (141-200)||(4266663-4266722)
chr6 (141-195)||(4626527-4626581)
chr6 (141-194)||(4564287-4564340)
chr6 (141-200)||(4458171-4458230)
chr6 (141-200)||(4516897-4516956)
chr6 (149-200)||(4568628-4568679)
chr6 (141-200)||(4622716-4622775)
chr6 (141-195)||(4489857-4489911)
chr6 (141-182)||(4481269-4481310)
chr6 (141-182)||(4561080-4561121)
chr6 (141-197)||(4470379-4470435)
chr6 (141-196)||(4503898-4503953)
chr6 (141-196)||(4574884-4574939)
chr6 (29-141)||(4829206-4829319)
[»] chr7 (1 HSPs)
chr7 (141-200)||(3086996-3087055)
[»] chr5 (1 HSPs)
chr5 (141-200)||(24103575-24103634)
[»] scaffold0477 (1 HSPs)
scaffold0477 (143-195)||(4188-4240)
[»] scaffold0288 (1 HSPs)
scaffold0288 (145-192)||(3224-3271)
[»] scaffold0199 (1 HSPs)
scaffold0199 (141-195)||(39-93)
[»] chr8 (1 HSPs)
chr8 (141-195)||(1674802-1674856)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 4835707 - 4835502
Alignment:
Q  5 gatgtcgaagaatatgttatacaactgacatagtatttgtatctgtcaatacaccaacgaaaacttgcgtctcaaagttggaaaagcggcaaatttgact 104  Q
    |||||| || || |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||| |||||||     
T  4835707 gatgtcaaaaaacatgttatacagctgacatagtgtttgtatctgtcaatacaccaacaaaaacttgcgcctcaatgttggaaaagtggcagatttgacg 4835608  T
Q  105 tattgggaaagtgcggctcagatgattgccgatgtgttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaaatga 204  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4835607 tattgggaaagtgcaactcagatgattgccgatgtgttcaagccattcaagacattttgtatcttccttccaaagatcggaacctaaagatgccaaatga 4835508  T
Q  205 ggagaa 210  Q
    ||||||    
T  4835507 ggagaa 4835502  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 4299377 - 4299318
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  4299377 ttcaagccattcaagacatttggtatcttctttccaaagattggaacctaaagattccaa 4299318  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 4514677 - 4514618
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  4514677 ttcaagccattcaagacatttagtatcttctttccaaagattggaacctaaagattccaa 4514618  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 4259710 - 4259652
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgcca 199  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  4259710 ttcaagccattcaagacatttggtatcttctttccaaagattggaacctaacgatgcca 4259652  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 3172317 - 3172376
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||    
T  3172317 ttcaagccattcaagacatttagtatcttctttccaaagattagaatctaaagatgccaa 3172376  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 4256180 - 4256121
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||    
T  4256180 ttcaagccattcaagacacttggtatcttctttccaaagattggaacctaacgatgccaa 4256121  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 4461699 - 4461757
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgcca 199  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  4461699 ttcaagccattcaagacatttagtatcttctttccaaagattggaatttaaagatgcca 4461757  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 4598747 - 4598809
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaaatg 203  Q
    ||||||||| |||||||| || |||||||| ||||||||||||| ||||||||||||||||||    
T  4598747 ttcaagccagtcaagacacttggtatcttctttccaaagattggtacctaaagatgccaaatg 4598809  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 4266722 - 4266663
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  4266722 ttcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgccaa 4266663  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 4626527 - 4626581
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 195  Q
    |||||||||||||||||| || || ||||| ||||||||||||||||||||||||    
T  4626527 ttcaagccattcaagacaattggtgtcttctttccaaagattggaacctaaagat 4626581  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 4564287 - 4564340
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaaga 194  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||||||||||    
T  4564287 ttcaagccattcaagacacttagtatcttctttccaaaggttggaacctaaaga 4564340  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 4458171 - 4458230
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||||  ||||||||||||    
T  4458171 ttcaagccactcaagacatttagtatattctttccaaagattggaatttaaagatgccaa 4458230  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 4516897 - 4516956
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    |||||||||||||||||||||  ||||||| ||||||||||| ||||||| ||| |||||    
T  4516897 ttcaagccattcaagacatttcatatcttctttccaaagattagaacctatagaagccaa 4516956  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 4568628 - 4568679
Alignment:
Q  149 attcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  4568628 attcaagacatttcatatcttctttccaaagattggaacctaaagaagccaa 4568679  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 4622716 - 4622775
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||| |||||||| ||  ||||||| ||||||||||||||||||| |||||||||    
T  4622716 ttcaagccactcaagacacttgatatcttctttccaaagattggaacctagagatgccaa 4622775  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 4489911 - 4489857
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 195  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||  ||||||||    
T  4489911 ttcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagat 4489857  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 4481269 - 4481310
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagatt 182  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  4481269 ttcaagccattcaagacatttagtatcttctttccaaagatt 4481310  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 4561080 - 4561121
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagatt 182  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  4561080 ttcaagccattcaagacatttagtatcttctttccaaagatt 4561121  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 4470379 - 4470435
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgc 197  Q
    ||||||||| ||||||||||| |||||||| |||||||||||| ||  |||||||||    
T  4470379 ttcaagccactcaagacatttagtatcttctttccaaagattgaaatttaaagatgc 4470435  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 4503953 - 4503898
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatg 196  Q
    ||||||||| ||||||||||| |||||||| ||||||||||| ||  |||||||||    
T  4503953 ttcaagccaatcaagacatttagtatcttctttccaaagattagagtctaaagatg 4503898  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 4574884 - 4574939
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatg 196  Q
    ||||| ||||||||||||||| |||||||| ||||||||||| ||  |||||||||    
T  4574884 ttcaatccattcaagacatttagtatcttctttccaaagattagagtctaaagatg 4574939  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 4829319 - 4829206
Alignment:
Q  29 ctgacatagtatttgtatctgtcaatacaccaacgaaaacttgcg-tctcaaagttggaaaagcggcaaatttgacttattgggaaagtgcggctcagat 127  Q
    |||||||||| |||||||||||  ||||||  || |||||| ||| |||||  | ||||||||  | | ||||||| |||||||| |||||| ||| | |    
T  4829319 ctgacatagtgtttgtatctgttgatacactgacaaaaactcgcggtctcagggctggaaaagtagtagatttgacgtattgggagagtgcgactcgggt 4829220  T
Q  128 gattgccgatgtgt 141  Q
    ||||||||||||||    
T  4829219 gattgccgatgtgt 4829206  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 3086996 - 3087055
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  3086996 ttcaagccattcaagacacttggtatcttctttccaaagattggaacctaaagatgccaa 3087055  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 24103575 - 24103634
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 200  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  24103575 ttcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgccaa 24103634  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 4240 - 4188
Alignment:
Q  143 caagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 195  Q
    ||||||| |||||||| || |||||||| ||||||||||||||||||||||||    
T  4240 caagccactcaagacacttggtatcttctttccaaagattggaacctaaagat 4188  T

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Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 3271 - 3224
Alignment:
Q  145 agccattcaagacattttgtatcttccttccaaagattggaacctaaa 192  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||    
T  3271 agccattcaagacacttggtatcttctttccaaagattggaacctaaa 3224  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 39 - 93
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 195  Q
    |||||||||||||||||| |  |||||||| |||||||| |||||||||||||||    
T  39 ttcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat 93  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 1674802 - 1674856
Alignment:
Q  141 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 195  Q
    |||||||||||||||||| |  |||||||| |||||||| |||||||||||||||    
T  1674802 ttcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat 1674856  T

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