View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1710_low_3 (Length: 511)

Name: NF1710_low_3
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1710_low_3
NF1710_low_3
[»] chr1 (7 HSPs)
chr1 (43-511)||(34484449-34484917)
chr1 (163-432)||(34498627-34498896)
chr1 (89-511)||(37920784-37921212)
chr1 (154-379)||(34520278-34520503)
chr1 (154-340)||(40802961-40803147)
chr1 (154-319)||(40705381-40705546)
chr1 (1-32)||(34484936-34484967)
[»] chr4 (1 HSPs)
chr4 (58-412)||(9598531-9598885)
[»] chr7 (1 HSPs)
chr7 (58-511)||(3317031-3317490)
[»] chr5 (2 HSPs)
chr5 (89-340)||(20856145-20856396)
chr5 (89-370)||(20849055-20849335)


Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 43 - 511
Target Start/End: Complemental strand, 34484917 - 34484449
Alignment:
Q  43 cttattatttgtttatttccttgcaattacattgcaaggccatggttaggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34484917 cttattatttgtttatttccttgcaattacattgcaaggccatggttaggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagac 34484818  T
Q  143 gtacnnnnnnngaaagaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattct 242  Q
    ||||       |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34484817 gtacaaaaaaagaaagaagggtatcatcaagaaggtgagggaactcactattctttgtggtattccagcatgtgctataatttccgatccttttgattct 34484718  T
Q  243 aaaacagagatgtggccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaa 342  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34484717 aaaacagaggtgtggccaaatctagatggagtcaaacaggtgcttgagaggtatcagaaatcatatatgaaagatgataaaaagaatgtgaaccaagaaa 34484618  T
Q  343 cttttcttttgcagcagattactaaagctagggaacatctgagaaagctgacacaagacaatcgtgagaaggagcaaaagattcgtatgaaaaattacat 442  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34484617 cttttcttttgcagcagattactaaagctagggaacaactgagaaagctgacacaagacaatcgtgagaaggagcaaaagattcgaatgaaaaattacat 34484518  T
Q  443 gcaaaacatgccggatgatttgaccgtttcagatttgaaagaacttgataagataattgagaaaaatat 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34484517 gcaaaacatgccggatgatttgaccgtttcagatttgaaagaacttgataagataattgagaaaaatat 34484449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 163 - 432
Target Start/End: Complemental strand, 34498896 - 34498627
Alignment:
Q  163 gtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtggccaaa 262  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34498896 gtatcatcaagaaggtgagagaactcaccattctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagaggtgtggccaaa 34498797  T
Q  263 tctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttgcagcagatt 362  Q
    |||  | | || ||||||||||||||||||||||||||| |||| |||||||||||| | ||| ||||||||||| |||| ||| |||||||| ||||||    
T  34498796 tctgaaggaagccaaacaggtgattgagaggtatcagaactcatatatgaaagatgagagaaaaaatgtgaaccaggaaagtttccttttgcaacagatt 34498697  T
Q  363 actaaagctagggaacatctgagaaagctgacacaagacaatcgtgagaaggagcaaaagattcgtatga 432  Q
     ||||||||||||| || ||||||||||  | |||||||||||||||||| ||||  || ||||||||||    
T  34498696 gctaaagctagggaccaactgagaaagcaaagacaagacaatcgtgagaatgagctgaacattcgtatga 34498627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 89 - 511
Target Start/End: Complemental strand, 37921212 - 37920784
Alignment:
Q  89 taggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagacgtacnnnnnnngaaagaagggtatcatcaagaaggtgagggaactc 188  Q
    ||||||||||||||| ||||||||||||||  ||| ||||  ||||||||  || ||        |||| ||||||||||||||||||||||| ||||||    
T  37921212 taggaagaaggtgaaacttgcttttatctctgatgattcagcaagaaaggcaacctataagaaaagaaaaaagggtatcatcaagaaggtgagcgaactc 37921113  T
Q  189 actgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtggccaaatctagatggagtc-aaacaggtgatt 287  Q
    ||  |||| || || |||||||| ||||||||||||||  |||||||||||||||||| |||| |||||||||||||||| |||| | ||||| ||||||    
T  37921112 accattctatgcggcattccagcttgtgctataatttctaatccttttgattctaaaatagaggtgtggccaaatctaga-ggaggctaaacatgtgatt 37921014  T
Q  288 gagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttgcagcagattactaaagctagggaacatctgagaa 387  Q
    ||||||||||| || |||||  |||||||||| | |||||||||||||||||| |  ||||| ||||||  |||||  ||||| |||||||||||   ||    
T  37921013 gagaggtatcaaaattcatcggtgaaagatgaaacaaagaatgtgaaccaagagagctttctattgcagaggattagcaaagccagggaacatcttcaaa 37920914  T
Q  388 agctgacacaagacaatcgtgagaaggagcaaaagattcgtatgaaaaattacatgcaaaaca------tgccggatgatttgaccgtttcagatttgaa 481  Q
    |||  |  || ||||||||||||||||||   || |||| |||||     |||||| ||||||      ||||||||| |||||||||||| ||||||||    
T  37920913 agcaaaagcacgacaatcgtgagaaggagttgaacattcttatgattgggtacatgaaaaacaaaaagctgccggatggtttgaccgtttcggatttgaa 37920814  T
Q  482 agaacttgataagataattgagaaaaatat 511  Q
    |||  |||||||| ||||||||||||||||    
T  37920813 agagtttgataagctaattgagaaaaatat 37920784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 154 - 379
Target Start/End: Complemental strand, 34520503 - 34520278
Alignment:
Q  154 gaaagaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagat 253  Q
    |||||||||||||||| ||||||||||| || ||||||  |||||||| ||||||||| ||||||||||||||| |||| |||||||||| ||||||| |    
T  34520503 gaaagaagggtatcattaagaaggtgagagagctcactactctttgtgatattccagcctgtgctataatttccaatccgtttgattctacaacagaggt 34520404  T
Q  254 gtggccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttg 353  Q
     ||||||||| | || ||||  | |||||||||||||||||| || ||  ||| ||| ||| |  | ||||| |||||| ||||||||| ||||||||||    
T  34520403 atggccaaatatggagggagctatacaggtgattgagaggtaccaaaatgcatatatcaaacacaagaaaaataatgtggaccaagaaagttttcttttg 34520304  T
Q  354 cagcagattactaaagctagggaaca 379  Q
    || |||||||||||| | ||||||||    
T  34520303 caacagattactaaaaccagggaaca 34520278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 340
Target Start/End: Original strand, 40802961 - 40803147
Alignment:
Q  154 gaaagaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagat 253  Q
    |||||||||||||||| ||||||||||| |||||| |   ||| |||||  || | || |||||||| |||||  |||||||| ||||| ||| |||| |    
T  40802961 gaaagaagggtatcataaagaaggtgagtgaactctcaactctctgtggagtttctgcttgtgctattatttcaaatccttttaattctcaaatagaggt 40803060  T
Q  254 gtggccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaaga 340  Q
     |||||| ||| ||| ||||  ||| ||||||||||||||||||| || ||||||   |||||||| |  |||||| ||||||||||    
T  40803061 ctggccagatcgagagggagcaaaaaaggtgattgagaggtatcataattcatctgctaaagatgaaaccaagaatttgaaccaaga 40803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 319
Target Start/End: Original strand, 40705381 - 40705546
Alignment:
Q  154 gaaagaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagat 253  Q
    ||||||||||| || | |||||||| || ||||||||  ||||||||| | ||||||| |||||||||||||||  |||||||||||||   |||||| |    
T  40705381 gaaagaagggtctcttaaagaaggtaagtgaactcaccattctttgtgatgttccagcttgtgctataatttccagtccttttgattctcggacagaggt 40705480  T
Q  254 gtggccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatga 319  Q
     |||||  ||| ||| |||| |||  || | |||||||||| ||| || | |||| ||||||||||    
T  40705481 ctggccgcatccagaaggagccaataagataattgagaggtttcaaaatttatctgtgaaagatga 40705546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 34484967 - 34484936
Alignment:
Q  1 aaagccagaaggcatttgcagagtaaagcaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  34484967 aaagccagaaggcatttgcagagtaaagcaac 34484936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 58 - 412
Target Start/End: Complemental strand, 9598885 - 9598531
Alignment:
Q  58 tttccttgcaattacattgcaaggccatggttaggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagacgtacnnnnnnngaaa 157  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||  |||| |||||||| ||| ||        | ||    
T  9598885 tttccttgcgattacattgcaaagccatggctaggaagaaggtgaaactcgcttttatctccaatgactcaacaagaaaggcgacctataagcggaggaa 9598786  T
Q  158 gaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtgg 257  Q
    ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9598785 gaaaggtatcatcaagaaggtgagagaactcactattctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagaggtgtgg 9598686  T
Q  258 ccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttgcagc 357  Q
    ||||||||| | | || ||||||| ||||||||||||||||||  |||| |||||||||||  | ||| |||||||||||||||| ||||||||||||      
T  9598685 ccaaatctaaaggaagccaaacagatgattgagaggtatcagagctcatatatgaaagatggaagaaaaaatgtgaaccaagaaagttttcttttgcaaa 9598586  T
Q  358 agattactaaagctagggaacatctgagaaagctgacacaagacaatcgtgagaa 412  Q
    ||||||||||||| ||||| || ||||||| ||  | ||| ||||||| ||||||    
T  9598585 agattactaaagcaagggagcaactgagaatgcaaagacacgacaatcatgagaa 9598531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 58 - 511
Target Start/End: Complemental strand, 3317490 - 3317031
Alignment:
Q  58 tttccttgcaattacattgcaaggccatggttaggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagacgtacnnnnnnngaaa 157  Q
    |||||||||||||||||||  | ||||||  ||||||||||||||| || || ||||||  ||||| ||||| ||||||||   | |||       | ||    
T  3317490 tttccttgcaattacattgtgaagccatgactaggaagaaggtgaaactcgcctttatcatcaatgattcaacaagaaaggcttcctacaaaaagaggaa 3317391  T
Q  158 gaagggtatcatcaagaaggtgagggaactcactgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtgg 257  Q
    |||   |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3317390 gaaaactatcatcaagaaggtgagagaactcactattctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagaggtgtgg 3317291  T
Q  258 ccaaatctagatggagtcaaacaggtgattgagaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttgcagc 357  Q
    ||||||||  | | ||  |||||||||||||| ||||||||||| |||| |||||||||||| | ||| |||||||||||||||| ||| ||||||||      
T  3317290 ccaaatctgaaggaagcaaaacaggtgattgaaaggtatcagaactcatatatgaaagatgagagaaaaaatgtgaaccaagaaagtttccttttgcaaa 3317191  T
Q  358 agattactaaagctagggaacatctgagaaagctgacacaagacaatcgtgagaaggagcaaaagattcgtatgaaaaattacatgcaaaaca------t 451  Q
     |||||||||||||| |||||| ||||||| ||  | ||| ||||||| |||||| ||||  || |||| ||||      ||| |||||||||      |    
T  3317190 ggattactaaagctaaggaacagctgagaatgcaaagacacgacaatcatgagaatgagctgaacattcttatgttttggtacctgcaaaacaacaagct 3317091  T
Q  452 gccggatgatttgaccgtttcagatttgaaagaacttgataagataattgagaaaaatat 511  Q
    ||| |||||| |||||||||| |||||||||||  | |||||| ||||||| ||||||||    
T  3317090 gccagatgatgtgaccgtttctgatttgaaagacttggataagttaattgaaaaaaatat 3317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 89 - 340
Target Start/End: Complemental strand, 20856396 - 20856145
Alignment:
Q  89 taggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagacgtacnnnnnnngaaagaagggtatcatcaagaaggtgagggaactc 188  Q
    |||||||||||| || |||||||||||||| |||| |||   ||||||||  || |||       |||| |||||||||||||||||||| || ||||||    
T  20856396 taggaagaaggtaaaacttgcttttatctctaatgattcggcaagaaaggcaacctacaataaaagaaaaaagggtatcatcaagaaggttagagaactc 20856297  T
Q  189 actgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtggccaaatctagatggagtcaaacaggtgattg 288  Q
    ||  ||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||| |||||||| ||||||| || | || |||||||||||    
T  20856296 accattctttgtggtattccagcatgtgctataatttccaatccttttagttccaaaacagaggtgtggccagatctagagggggccagacaggtgattg 20856197  T
Q  289 agaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaaga 340  Q
    | ||||| ||||| |||||  |||||||||| | ||||||| ||||||||||    
T  20856196 aaaggtaccagaactcatcagtgaaagatgaaacaaagaatatgaaccaaga 20856145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 89 - 370
Target Start/End: Complemental strand, 20849335 - 20849055
Alignment:
Q  89 taggaagaaggtgaagcttgcttttatctccaatgcttcaagaagaaaggagacgtacnnnnnnngaaagaagggtatcatcaagaaggtgagggaactc 188  Q
    |||||||||||| || |||||||||||||| |||| |||   ||||||||  || |||       || | ||||||||||||||||| || ||  |||||    
T  20849335 taggaagaaggtaaaacttgcttttatctctaatgattcggcaagaaaggcaacctacaataaaagagaaaagggtatcatcaagaaagttaga-aactc 20849237  T
Q  189 actgttctttgtggtattccagcatgtgctataatttccgatccttttgattctaaaacagagatgtggccaaatctagatggagtcaaacaggtgattg 288  Q
    ||  ||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||  |||||||| |||||||  | | || |||||||||||    
T  20849236 accattctttgtggtattccagcatgtgctataatttccaatccttttagttccaaaacagaagtgtggccagatctagagagggccagacaggtgattg 20849137  T
Q  289 agaggtatcagaaatcatctatgaaagatgataaaaagaatgtgaaccaagaaacttttcttttgcagcagattactaaagc 370  Q
    ||||||| ||||| |||||  |||||||||| | |||||||||||||||||| | ||| || ||||||  ||||||||||||    
T  20849136 agaggtaccagaactcatcagtgaaagatgaaacaaagaatgtgaaccaagagagtttcctattgcagaggattactaaagc 20849055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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