View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_low_4 (Length: 481)
Name: NF1710_low_4
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 6 - 465
Target Start/End: Original strand, 38422890 - 38423350
Alignment:
| Q |
6 |
agaagcatagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtctgttcca |
105 |
Q |
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| T |
38422890 |
agaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtgtgttcca |
38422989 |
T |
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| Q |
106 |
cttgaatgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattccgttt |
205 |
Q |
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| T |
38422990 |
cttgaatgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattacgttt |
38423089 |
T |
|
| Q |
206 |
tttcctttgattaattactcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggttccacgtt |
305 |
Q |
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| T |
38423090 |
tttcctttgattaattactcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggttccacgtt |
38423189 |
T |
|
| Q |
306 |
ggcttttcttagtactcaagg-ttttttaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataataaataat |
404 |
Q |
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| T |
38423190 |
ggcttttcttagtactcaaggtttttttaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataataaataat |
38423289 |
T |
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| Q |
405 |
cctcataatatggtcatgtttggtggtttgaacttgatggagaagttttaaacattgaagt |
465 |
Q |
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| T |
38423290 |
cctcataatatggtcatgtttggtggtttgaacttgatggagaagttttaaacattgaagt |
38423350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 38413003 - 38413218
Alignment:
| Q |
6 |
agaagcatagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtctgttcca |
105 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
38413003 |
agaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaatatcttccatgaatgaaaccggcgaagtaagtctgttcca |
38413102 |
T |
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| Q |
106 |
cttgaa---tgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattccg |
202 |
Q |
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| T |
38413103 |
cctgaatcctgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaaccattgacattccg |
38413202 |
T |
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| Q |
203 |
ttttttcctttgatta |
218 |
Q |
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| T |
38413203 |
tttttctctttgatta |
38413218 |
T |
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