View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_low_5 (Length: 428)
Name: NF1710_low_5
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 34092693 - 34092293
Alignment:
| Q |
12 |
ctatattatactaatctctctattacatcttatcccaagcaccaaacttccaaaggaacctaatagtgaagttgggttgtgtttacattgcaaggatcaa |
111 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34092693 |
ctatattatactaatctctctattacatctaatcccaagcaccaaacttccaaaggaacctaatagtaaagttgggttgtgtttacattgcaaggatcaa |
34092594 |
T |
|
| Q |
112 |
atgtaaccaataaagtttcatccattgatgtctacgtttgctagctgactacatctgatcacaagtggataaggaactatatgagtggacaaatctgaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092593 |
atgtaaccaataaagtttcatccattgatgtctacgtttgctagctgactacatctgatcacaagtggataaggaactatatgagtggacaaatctgaat |
34092494 |
T |
|
| Q |
212 |
cacaaattctgtgtgattcatacaaatgtaattgatagaaaaaggcccctcaattattcaatatcgttttcctccatagtgtacacaaatccaataacta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092493 |
cacaaattctgtgtgattcatacaaatgtaattgatagaaaaaggcccctcaattattcaatatcgttttcctccatagtgtacacaaatccaataacta |
34092394 |
T |
|
| Q |
312 |
tatatcttttttgagaagnnnnnnnnnnntcgaaatattttcaataaaaagaaactatcaacatcaagttagggataaaagaatgaatcattagtgagaa |
411 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092393 |
tatatcttttttaagaagaaaaaaaataaacgaaatattttcaataaaaagaaactatcaacatcaagttagggataaaagaatgaatcattagtgagaa |
34092294 |
T |
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| Q |
412 |
t |
412 |
Q |
| |
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| T |
34092293 |
t |
34092293 |
T |
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