View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1710_low_6 (Length: 393)
Name: NF1710_low_6
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 42670474 - 42670106
Alignment:
| Q |
10 |
attatacttgcatacaaaagtcaaaaacaaactaaacagatgaggaatatgcagattaatcacccgtccatttctggcatttggagatccatgaagcaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42670474 |
attatacttgcatacaaaagtcaaaaacaaactaaacagatgaggaatatgcagattaattacccgtccatttctggcatttggagatccatgaagcaag |
42670375 |
T |
|
| Q |
110 |
catcaaaattatgtggtggtttaagcaccttaagtgcagccttaccaccatccacacaggtaactactgctccatattttcgcagaacaccttctgcaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42670374 |
catcaaaattatgtggtggtttaagcaccttaagagcagccttaccaccatccacacaggtaactactgctccatattttcgcagaacaccttctgcaac |
42670275 |
T |
|
| Q |
210 |
ttttctgttcactgcgttatcatcaaccaccaaaattcgtttgtgtatcaataaattttcaagttgggatactttctttctgtctatttgttttctccca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42670274 |
ttttctgttcactgcgttatcatcaaccaccaaaattcgtttgtgtatcaataaattttcaagttgggatactttctttctgtctatttgttttctccca |
42670175 |
T |
|
| Q |
310 |
gttccaagggattctctgtagtagcgaatcaaaacactttgccaaagaggcttcattagtacatcatct |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42670174 |
gttccaagggattctctgtagtagcgaatcaaaacactttgccaaagaggcttcattagtacatcatct |
42670106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 19388370 - 19388421
Alignment:
| Q |
71 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatg |
122 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
19388370 |
acccatccatttctggcatttgaatgtccatgaagcaagcatcaaatttatg |
19388421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 44819113 - 44819158
Alignment:
| Q |
71 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44819113 |
acccgtccatttctggcatttgaatatccatgaagcaagcatcaaa |
44819158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University