View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1710_low_9 (Length: 356)
Name: NF1710_low_9
Description: NF1710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1710_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 44543110 - 44542779
Alignment:
| Q |
19 |
tgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttcaattgacaaaggatgatggaggatgaaa |
118 |
Q |
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| T |
44543110 |
tgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttcaattgacaaaggatgatggaggatgaaa |
44543011 |
T |
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| Q |
119 |
agacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataattattggtggtgaaggtggaattacgggacttcttgtgttcggtgg |
218 |
Q |
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| T |
44543010 |
agacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataactattggtggtgaaggtggaattacgggacttcttgtgttcggtgg |
44542911 |
T |
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| Q |
219 |
agcattggccattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcatccatcctcagtctcaccaccaacaatta |
318 |
Q |
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| T |
44542910 |
agcattggctattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcatccatc------ctcaccaccaacaatta |
44542817 |
T |
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| Q |
319 |
ttattggctcacgataaagactctcttcaaaattcaac |
356 |
Q |
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| T |
44542816 |
ttattggctgacgataaacactctcttcaaaattcaac |
44542779 |
T |
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