View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17110_low_1 (Length: 500)
Name: NF17110_low_1
Description: NF17110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17110_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 12805938 - 12805669
Alignment:
| Q |
1 |
aaaatagtgtaaagagaaagagatatgggtatttgtatgggtggacaagtatgttgagtagtattatttatgtagaaaaaacatcaaatgattgaggaat |
100 |
Q |
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| T |
12805938 |
aaaatagtgtaaagagaaagagatatgggtatttgtatgggtggacaagtatgttgagtagtattatttatgtagaaaaaacatcaaatgattgaggaat |
12805839 |
T |
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| Q |
101 |
aaaaagagaggtgtagcaaattttttactcataagtttattgttttcttctcttttatctaaggattgttgctgtctccttagatacaaattcttcttgg |
200 |
Q |
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| T |
12805838 |
aaaaagagaggtgtagcaaattttttactcataagtttattgttttcttctcttttatctaaggattgttgctgtctccttagatacaaattcttcttgg |
12805739 |
T |
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| Q |
201 |
tgttttctgggtttattctcaaaagcttttttcaaagagacaagaaagcaaggaaaattcaggtcattac |
270 |
Q |
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| T |
12805738 |
tgttttctgggtttattctcaaaagcttttttcaaagagacaagaaagcaaggaaaattcaggtcattac |
12805669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 313 - 482
Target Start/End: Complemental strand, 12805626 - 12805458
Alignment:
| Q |
313 |
ccaagagacaagaaaacatgcaatttaattttagtttgagatgataaatattattagattgtgacaaatttaagaaatttcagatttgcatcaagaaaac |
412 |
Q |
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| T |
12805626 |
ccaagagacaagaaaacatgcaatt-aattttagtttgagatgataaatattattagattgtgacaaatttaagaaatttcagatttgcatcaagaaaac |
12805528 |
T |
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| Q |
413 |
atggctgctgcttcatcatctacacctttcttggaaatcagacaagaaaatcaaagtcagattactcaac |
482 |
Q |
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| T |
12805527 |
atggctgctgcttcatcatctacacctttcttggaaatcagacaagaaaatcaaagtcagattactcaac |
12805458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 42286195 - 42286253
Alignment:
| Q |
413 |
atggctgctgcttcatcatctacacctttcttggaaatcagacaagaaaatcaaagtca |
471 |
Q |
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| T |
42286195 |
atggcggctgcttcttcatctacatcattctttggaatcagagaagaaaatcaaagtca |
42286253 |
T |
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